Merge branch 'awslabs:main' into main

Author: willmacs

datasets/radiant.yaml

@@ -0,0 +1,85 @@
+Name: RADIANT Public Data
+Description: >
+  The Real-time Analysis and Discovery in Integrated And Networked Technologies (RADIANT)
+  initiative seeks to develop an extensible, federated framework for rapid exchange of 
+  multimodal clinical and research data on behalf of accelerated discovery and patient impact.
+  Coordination and implementation of initial RADIANT deployments will leverage a network of 
+  more than 35 partnered health care systems and participating patient families within the 
+  Children’s Brain Tumor Network (CBTN) and the Pediatric Neuro-Oncology Consortium (PNOC). 
+  This data set is composed of public multi-modal data provisioned by RADIANT. The initial
+  bolus of data is from CBTN and consists of clinical data extracted/abstracted from 
+  electronic medical records, omic data such as genomics, transcriptomics and proteomics and
+  radiology and pathology imaging data. Data are collected or generated as part of consent-based, 
+  IRB-approved observational or interventional studies with the goal of making it available
+  globally to researchers across a broad number of disciplines. 
+Documentation: https://cbtn.org/research-resources
+Contact: [email protected]
+ManagedBy: "[The Center for Data-Driven Discovery in Biomedicine (D3b) at the Children's Hospital of Philadelphia](https://d3b.center/)"
+UpdateFrequency: |
+  Data is updated on a regular basis by the RADIANT teams to make data available as
+  rapidly as possible. 
+Tags:
+  - aws-pds
+  - life sciences
+  - cancer
+  - genetic
+  - genomic
+  - transcriptomics
+  - medical imaging
+  - radiology
+  - Homo sapiens
+  - pediatric
+  - whole genome sequencing
+License: "NIH Genomic Data Sharing Policy: https://grants.nih.gov/grants/guide/notice-files/not-od-14-124.html"
+Resources:
+- Description: "Children's Brain Tumor Network"
+  ARN: arn:aws:s3:::opendata-chop-study-us-east-1-prd-sd-bhjxbdqk
+  Region: us-east-1
+  Type: S3 Bucket
+  ControlledAccess: https://cbtn.org/
+DataAtWork:
+  Tools & Applications:
+    - Title: RADIANT Source Code
+      URL: https://github.com/radiant-network
+      AuthorName: RADIANT Team
+      AuthorURL: https://github.com/radiant-network
+    - Title: CAVATICA
+      URL: http://cavatica.org
+      AuthorName: Seven Bridges Genomics
+      AuthorURL: http://www.sevenbridges.com
+    - Title: PedcBioPortal
+      URL: https://pedcbioportal.kidsfirstdrc.org
+      AuthorName: cBioPortal
+      AuthorURL: https://www.cbioportal.org/
+    - Title: Flywheel (CHOP D3b)
+      URL: https://chop.flywheel.io
+      AuthorName: Flywheel
+      AuthorURL: https://flywheel.io/
+  Publications:
+    - Title: "The children's brain tumor network (CBTN) - Accelerating research in pediatric central nervous system tumors through collaboration and open science."
+      URL: https://pubmed.ncbi.nlm.nih.gov/36335802/
+      AuthorName: Jena V Lilly, Jo Lynne Rokita, Jennifer L Mason, et al.
+    - Title: "The landscape of primary mismatch repair deficient gliomas in children, adolescents, and young adults: a multi-cohort study"
+      URL: https://pubmed.ncbi.nlm.nih.gov/39701117/
+      AuthorName: Logine Negm, Jiil Chung, Liana Nobre, et al.
+    - Title: "Multiparametric MRI along with machine learning predicts prognosis and treatment response in pediatric low-grade glioma"
+      URL: https://pubmed.ncbi.nlm.nih.gov/39747214/
+      AuthorName: Anahita Gathi Kazerooni, Adam Kraya, Komal S Rathi, Meen Chul Kim, et al.
+    - Title: "Multi-scale signaling and tumor evolution in high-grade gliomas" 
+      URL: https://pubmed.ncbi.nlm.nih.gov/38981438/
+      AuthorName: Jingxian Liu, Song Cao, Kathleen J Imback, et al.
+    - Title: "Germline analysis of an international cohort of pediatric diffuse midline glioma patients" 
+      URL: https://pubmed.ncbi.nlm.nih.gov/40072012/
+      AuthorName: Marion K Mateos, Pamela Ajuyah, Noemi Fuentes-Bolanos, et al.
+    - Title: "A road map for the treatment of pediatric diffuse midline glioma" 
+      URL: https://pubmed.ncbi.nlm.nih.gov/38039965/
+      AuthorName: Carl Koschmann, Wajd N Al-Holou, Marta M Alonso, et al.
+    - Title: "Use of External Control Cohorts in Pediatric Brain Tumor Clinical Trials" 
+      URL: https://pubmed.ncbi.nlm.nih.gov/38394473/
+      AuthorName: Ashley S Margol, Annette M Molinaro, Arzu Onar-Thomas, et al.
+    - Title: "OpenPBTA: The Open Pediatric Brain Tumor Atlas" 
+      URL: https://pubmed.ncbi.nlm.nih.gov/37492101/
+      AuthorName: Joshua A Shapiro, Krutika S Gaonkar, Stephanie J Spielman, et al.
+    - Title: "Generation and multi-dimensional profiling of a childhood cancer cell line atlas defines new therapeutic opportunities" 
+      URL: https://pubmed.ncbi.nlm.nih.gov/37001527/
+      AuthorName: Claire Xin Sun, Paul Daniel, Gabrielle Bradshaw et al.

datasets/wis2-global-cache.yaml

@@ -23,11 +23,15 @@ Tags:
 License: There are no restrictions on the use of this data. Attribution of original source is requested.
 Resources:
   - Description: Core data as defined in the [WMO Unified Data Policy (Resolution 1 (Cg-19))](https://library.wmo.int/idurl/4/58009) and the [initial Catalogue of Core Data](http://library.wmo.int/doc_num.php?explnum_id=11001#page=139). Data covers a global extent. Data is provided in WMO approved formats - GRIB, BUFR and NetCDF. Users should subscribe to receive notification messages about newly available data. Please refer to the documentation.
-    ARN: arn:aws:s3:::wis2-global-cache
-    Region: eu-west-2
+    ARN: arn:aws:s3:::wis2globalcache
+    Region: us-east-1
     Type: S3 Bucket
     Explore: 
-    - '[Browse Bucket](https://wis2-global-cache.s3.amazonaws.com/index.html)'
+    - '[Browse Bucket](https://wis2globalcache.s3.us-east-1.amazonaws.com/index.html)'
+  - Description: Notifications for new wis2globalcache data
+    ARN: arn:aws:sns:us-east-1:211648629506:wis2globalcache-object_created
+    Region: us-east-1
+    Type: SNS Topic
 DataAtWork:
   Tutorials:
     - Title: WIS 2.0 video for 19th World Meterological Congress
@@ -42,3 +46,4 @@ DataAtWork:
       AuthorName: World Meteorological Organisation
 ADXCategories:
   - Environmental Data
+