From c87ae682b336169820715739071498150f0bc8d3 Mon Sep 17 00:00:00 2001 From: Xinpeng Zhang <84593788+Xinpeng021001@users.noreply.github.com> Date: Fri, 24 Oct 2025 20:21:47 -0500 Subject: [PATCH] run_dbcan yml --- datasets/run_dbcan-database.yaml | 32 ++++++++++++++++++++++++++++++++ 1 file changed, 32 insertions(+) create mode 100644 datasets/run_dbcan-database.yaml diff --git a/datasets/run_dbcan-database.yaml b/datasets/run_dbcan-database.yaml new file mode 100644 index 000000000..5787942ff --- /dev/null +++ b/datasets/run_dbcan-database.yaml @@ -0,0 +1,32 @@ +Name: run_dbcan CAZyme and CGC annotation database on AWS +Description: Description: Database for use with run_dbcan (CAZyme and CGC annotation), including CAZyme, Transporter, Transcription factor, Signaling Transduction Protein, Sulfatase, Peptidase, and Polysaccharide utilization Loci. +Documentation: https://run-dbcan.readthedocs.io/en/latest/ +Contact: xzhang55@huskers.unl.edu; hyi@stjude.org; yyin@unl.edu +ManagedBy: Xinpeng Zhang; Haidong Yi; Yanbin Yin +UpdateFrequency: This database will update annually and usually in July/August. +Tags: + - aws-pds + - metagenomics + - microbiome + - benchmark + - bioinformatics + - life sciences +License: There are no restrictions on the use of this data. +Resources: + - Description: run_dbcan CAZyme and CGC annotation database + ARN: NA #SHOULD BE CAHNGED + Region: us-west-2 + Type: S3 Bucket + Explore: + - '[Browse Bucket](NA)' #SHOULD BE CHANGED +DataAtWork: + Tutorials: + Tools & Applications: + - Title: run_dbcan + URL: https://run-dbcan.readthedocs.io/en/latest/ + AuthorName: Xinpeng Zhang; Haidong Yi; Jinfang Zheng; Le Huang; Qiwei Ge; Yanbin Yin + AuthorURL: https://github.com/bcb-unl/run_dbcan + Publications: + - Title: "dbCAN3: automated carbohydrate-active enzyme and substrate annotation" + URL: https://doi.org/10.1093/nar/gkad328 + AuthorName: Jinfang Zheng, Qiwei Ge, Yuchen Yan, Xinpeng Zhang, Le Huang, Yanbin Yin Author Notes