ran precommit and updated test versions in CI

Author: kthyng

.github/workflows/test.yaml

@@ -9,7 +9,7 @@ jobs:
       fail-fast: false
       matrix:
         os: ["macos-latest", "ubuntu-latest", "windows-latest"]
-        python-version: ["3.10", "3.11", "3.12"]
+        python-version: ["3.11", "3.12", "3.13"]
     steps:
       - name: Checkout source
         uses: actions/checkout@v4

.pre-commit-config.yaml

@@ -1,7 +1,7 @@
 repos:
 
 - repo: https://github.com/econchick/interrogate
-  rev: 1.2.0
+  rev: 1.6.0
   hooks:
     - id: interrogate
       exclude: ^(docs|setup.py|tests)

ci/environment-py3.12.yml

@@ -6,7 +6,7 @@ dependencies:
   - cf_xarray
   - dask
   - netcdf4
-  - numpy 
+  - numpy
   - pip
   - requests
   - scikit-learn

extract_model/extract_model.py

@@ -617,15 +617,19 @@ def pt_in_itriangle_proj(ix, iy):
                     with warnings.catch_warnings():
                         warnings.simplefilter("ignore")
                         da = xgcm_grid.transform(
-                            da, "Z", np.array(Z), target_data=da.cf["vertical"], method="linear"
+                            da,
+                            "Z",
+                            np.array(Z),
+                            target_data=da.cf["vertical"],
+                            method="linear",
                         )
                     da[zkey].attrs = z_attrs
                     da = order(da)  # reorder dimensions to convention
                 elif isinstance(da, xr.Dataset):
                     da_calcs = {}
                     for data_var in da.data_vars:
                         if "s_rho" in da.dims:
-                            dause = da[data_var].chunk({"s_rho": -1})#.copy()
+                            dause = da[data_var].chunk({"s_rho": -1})  # .copy()
                         else:
                             dause = da[data_var]
                         with warnings.catch_warnings():

extract_model/preprocessing.py

@@ -1,9 +1,10 @@
 """Preprocessing-related functions for model output."""
 
 
-from typing import Optional
 import warnings
 
+from typing import Optional
+
 import numpy as np
 import xarray as xr
 

extract_model/utils.py

@@ -140,7 +140,7 @@ def f_standard_names(value):
     to_merge.append(ds.filter_by_attrs(standard_name=f_standard_names))
 
     # Combine
-    return xr.merge(to_merge, compat='no_conflicts')
+    return xr.merge(to_merge, compat="no_conflicts")
 
 
 def naive_subbox(ds: xr.Dataset, bbox: BBoxType, dask_array_chunks: bool = False):