Merge pull request #2 from b-cubed-eu/add-occ-cubes

Create data package of cube datasets

Author: wlangera

.gitignore

@@ -16,6 +16,9 @@
 *.shx
 *.xls*
 *_files
+*.csv
+*.gz
+*.zip
 docs
 libs
 output

README.Rmd

@@ -48,11 +48,12 @@ This code is developed in context of **T5.5** of the [B-Cubed project](https://b
 
 ## 📦 The `b3data` data package
 
-Once published, the data package will be available here:
+- **Name**: `b3data`
+- **Published at**: [Zenodo](https://zenodo.org/) (DOI to be reserved)
+- **Used in**: [b3verse](https://docs.b-cubed.eu/guides/b3verse/)
+- **Importable in R via**: [frictionless](https://docs.ropensci.org/frictionless/) R package
 
-> 🕐 *URL will be provided when available*
-
-Datasets can be imported in R like this:
+Resources can be imported in R like this:
 
 ### Step 1 — Load the frictionless R package
 
@@ -74,7 +75,7 @@ b3data_package <- read_package("https://zenodo.org/records/10053702/files/datapa
 b3data_package
 ```
 
-### Step 3 — Import a dataset
+### Step 3 — Import a resource (dataset)
 
 Tabular datasets can be loaded using `read_resource()`.
 

README.md

@@ -35,11 +35,13 @@ project](https://b-cubed.eu/).
 
 ## 📦 The `b3data` data package
 
-Once published, the data package will be available here:
+- **Name**: `b3data`
+- **Published at**: [Zenodo](https://zenodo.org/) (DOI to be reserved)
+- **Used in**: [b3verse](https://docs.b-cubed.eu/guides/b3verse/)
+- **Importable in R via**:
+  [frictionless](https://docs.ropensci.org/frictionless/) R package
 
-> 🕐 *URL will be provided when available*
-
-Datasets can be imported in R like this:
+Resources can be imported in R like this:
 
 ### Step 1 — Load the frictionless R package
 
@@ -64,7 +66,7 @@ b3data_package
 #> Use `unclass()` to print the Data Package as a list.
 ```
 
-### Step 3 — Import a dataset
+### Step 3 — Import a resource (dataset)
 
 Tabular datasets can be loaded using `read_resource()`.
 

data/b3data_package/datapackage.json

@@ -0,0 +1,75 @@
+{
+  "name": "b3data",
+  "id": "https://doi.org/10.5281/zenodo.15181097",
+  "resources": [
+    {
+      "name": "bird_cube_belgium_mgrs10",
+      "path": "bird_cube_belgium_mgrs10.csv.gz",
+      "profile": "tabular-data-resource",
+      "format": "csv",
+      "mediatype": "text/csv",
+      "encoding": "utf-8",
+      "title": "Occurrence cube for birds in Belgium (MGRS 10 km)",
+      "description": "Occurrence cube for birds in Belgium between 2000 en 2024. The taxonomical resolution is 'species' and the temporal resolution is 'year' Spatial aggregation is done using the MGRS grid at 10 km scale.",
+      "sources": ["GBIF Occurrence Download", "https://doi.org/10.15468/dl.y3wpwk"],
+      "licenses": [" CC BY-NC 4.0", "https://creativecommons.org/licenses/by-nc/4.0/", "Creative Commons Attribution-NonCommercial 4.0 International"],
+      "schema": {
+        "fields": [
+          {
+            "name": "year",
+            "type": "number"
+          },
+          {
+            "name": "mgrscode",
+            "type": "string"
+          },
+          {
+            "name": "specieskey",
+            "type": "number"
+          },
+          {
+            "name": "species",
+            "type": "string"
+          },
+          {
+            "name": "family",
+            "type": "string"
+          },
+          {
+            "name": "n",
+            "type": "number"
+          },
+          {
+            "name": "mincoordinateuncertaintyinmeters",
+            "type": "number"
+          },
+          {
+            "name": "familycount",
+            "type": "number"
+          }
+        ]
+      }
+    }
+  ],
+  "title": "b3data: Data resources for the b3verse",
+  "description": "This data package contains data resources to be used across the b3verse (https://docs.b-cubed.eu/guides/b3verse/). This includes example datasets (occurrence cubes) as well as spatial resources like reference grids or raster data.",
+  "keywords1": "data cubes",
+  "licenses.name": " CC BY-NC 4.0",
+  "version": "0.1.0",
+  "sources.title": "b3data-scripts",
+  "contributors.title": "Ward Langeraert",
+  "contributors.path": "https://orcid.org/0000-0002-5900-8109",
+  "contributors.email": "[email protected]",
+  "contributors.role": "author",
+  "contributors.organization": "Research Institute for Nature and Forest (INBO)",
+  "contributors.title.1": "Toon Van Daele",
+  "contributors.path.1": "https://orcid.org/0000-0002-1362-853X",
+  "contributors.role.1": "contributor",
+  "contributors.organization.1": "Research Institute for Nature and Forest (INBO)",
+  "sources.path": "https://github.com/b-cubed-eu/b3data-scripts",
+  "licenses.path": "https://creativecommons.org/licenses/by-nc/4.0/",
+  "licenses.title": "Creative Commons Attribution-NonCommercial 4.0 International",
+  "keywords2": "b3verse",
+  "keywords3": "frictionless",
+  "keywords4": "biodiversity"
+}

inst/en_gb.dic

@@ -1,6 +1,10 @@
 Daele
+EEA
+GeoJSON
 Havenlaan
 Langeraert
+MGRS
+NC
 Rproj
 Teirlinckgebouw
 cff