-
Notifications
You must be signed in to change notification settings - Fork 0
Expand file tree
/
Copy pathsettings.html
More file actions
502 lines (382 loc) · 25.1 KB
/
settings.html
File metadata and controls
502 lines (382 loc) · 25.1 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
<!DOCTYPE html>
<!--[if IE 8]><html class="no-js lt-ie9" lang="en" > <![endif]-->
<!--[if gt IE 8]><!--> <html class="no-js" lang="en" > <!--<![endif]-->
<head>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>Configuration file — Bakery 1.0 documentation</title>
<link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
<link rel="index" title="Index" href="genindex.html" />
<link rel="search" title="Search" href="search.html" />
<link rel="next" title="XML settings file" href="xml_structure.html" />
<link rel="prev" title="Method" href="method.html" />
<script src="_static/js/modernizr.min.js"></script>
</head>
<body class="wy-body-for-nav">
<div class="wy-grid-for-nav">
<nav data-toggle="wy-nav-shift" class="wy-nav-side">
<div class="wy-side-scroll">
<div class="wy-side-nav-search">
<a href="index.html" class="icon icon-home"> Bakery
</a>
<div class="version">
2.0
</div>
<div role="search">
<form id="rtd-search-form" class="wy-form" action="search.html" method="get">
<input type="text" name="q" placeholder="Search docs" />
<input type="hidden" name="check_keywords" value="yes" />
<input type="hidden" name="area" value="default" />
</form>
</div>
</div>
<div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="main navigation">
<ul class="current">
<li class="toctree-l1"><a class="reference internal" href="method.html">Method</a></li>
<li class="toctree-l1 current"><a class="current reference internal" href="#">Configuration file</a><ul>
<li class="toctree-l2"><a class="reference internal" href="xml_structure.html">XML settings file</a></li>
<li class="toctree-l2"><a class="reference internal" href="#dodecane">Dodecane</a><ul>
<li class="toctree-l3"><a class="reference internal" href="#settings"><cite><settings></cite></a></li>
<li class="toctree-l3"><a class="reference internal" href="#cg-molecule"><cite><cg_molecule></cite></a></li>
<li class="toctree-l3"><a class="reference internal" href="#cg-configuration"><cite><cg_configuration></cite></a></li>
<li class="toctree-l3"><a class="reference internal" href="#hybrid-configuration"><cite><hybrid_configuration></cite></a></li>
<li class="toctree-l3"><a class="reference internal" href="#hybrid-topology"><cite><hybrid_topology></cite></a></li>
</ul>
</li>
<li class="toctree-l2"><a class="reference internal" href="#network-backmapping">Network backmapping</a><ul>
<li class="toctree-l3"><a class="reference internal" href="#source-coordinate-and-source-topology"><cite><source_coordinate></cite> and <cite><source_topology></cite></a></li>
<li class="toctree-l3"><a class="reference internal" href="#cg-bead"><cite><cg_bead></cite></a><ul>
<li class="toctree-l4"><a class="reference internal" href="#charge-map"><cite><charge_map></cite></a></li>
</ul>
</li>
</ul>
</li>
</ul>
</li>
<li class="toctree-l1"><a class="reference internal" href="workflow.html">Workflow</a></li>
</ul>
</div>
</div>
</nav>
<section data-toggle="wy-nav-shift" class="wy-nav-content-wrap">
<nav class="wy-nav-top" aria-label="top navigation">
<i data-toggle="wy-nav-top" class="fa fa-bars"></i>
<a href="index.html">Bakery</a>
</nav>
<div class="wy-nav-content">
<div class="rst-content">
<div role="navigation" aria-label="breadcrumbs navigation">
<ul class="wy-breadcrumbs">
<li><a href="index.html">Docs</a> »</li>
<li>Configuration file</li>
<li class="wy-breadcrumbs-aside">
</li>
</ul>
<hr/>
</div>
<div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
<div itemprop="articleBody">
<div class="section" id="configuration-file">
<h1>Configuration file<a class="headerlink" href="#configuration-file" title="Permalink to this headline">¶</a></h1>
<p>The description of backmapping configuration is stored in XML file format. The format of file is very similarly
to what is used by <a class="reference external" href="http://votca.org/">VOTCA</a> <a class="footnote-reference" href="#id1" id="id2">[1]</a>. In next two examples we will explain step-by-step how to create that file.</p>
<div class="toctree-wrapper compound">
<ul>
<li class="toctree-l1"><a class="reference internal" href="xml_structure.html">XML settings file</a></li>
</ul>
</div>
<div class="section" id="dodecane">
<h2>Dodecane<a class="headerlink" href="#dodecane" title="Permalink to this headline">¶</a></h2>
<p>The original <a class="reference external" href="http://votca.org/">VOTCA</a> <a class="footnote-reference" href="#id1" id="id3">[1]</a> mapping file is shown below. It represents mapping where two united-atoms are replaced by the one coarse-grained bead.</p>
<div class="highlight-xml notranslate"><div class="highlight"><pre><span></span><span class="nt"><cg_molecule></span>
<span class="nt"><name></span>DOD<span class="nt"></name></span> <span class="c"><!-- the name of the molecule after mapping --></span>
<span class="nt"><ident></span>DOD<span class="nt"></ident></span> <span class="c"><!-- the name of the molecule in atomistic topology --></span>
<span class="nt"><topology></span>
<span class="nt"><cg_beads></span>
<span class="nt"><cg_bead></span>
<span class="nt"><name></span>A1<span class="nt"></name></span>
<span class="nt"><type></span>A<span class="nt"></type></span>
<span class="nt"><mapping></span>A<span class="nt"></mapping></span>
<span class="nt"><beads></span>
1:DOD:C1 1:DOD:C2
<span class="nt"></beads></span>
<span class="nt"></cg_bead></span>
<span class="nt"><cg_bead></span>
<span class="nt"><name></span>B1<span class="nt"></name></span>
<span class="nt"><type></span>B<span class="nt"></type></span>
<span class="nt"><mapping></span>B<span class="nt"></mapping></span>
<span class="nt"><beads></span>
1:DOD:C3 1:DOD:C4
<span class="nt"></beads></span>
<span class="nt"></cg_bead></span>
<span class="nt"><cg_bead></span>
<span class="nt"><name></span>B2<span class="nt"></name></span>
<span class="nt"><type></span>B<span class="nt"></type></span>
<span class="nt"><mapping></span>B<span class="nt"></mapping></span>
<span class="nt"><beads></span>
1:DOD:C5 1:DOD:C6
<span class="nt"></beads></span>
<span class="nt"></cg_bead></span>
<span class="nt"><cg_bead></span>
<span class="nt"><name></span>B3<span class="nt"></name></span>
<span class="nt"><type></span>B<span class="nt"></type></span>
<span class="nt"><mapping></span>B<span class="nt"></mapping></span>
<span class="nt"><beads></span>
1:DOD:C7 1:DOD:C8
<span class="nt"></beads></span>
<span class="nt"></cg_bead></span>
<span class="nt"><cg_bead></span>
<span class="nt"><name></span>B4<span class="nt"></name></span>
<span class="nt"><type></span>B<span class="nt"></type></span>
<span class="nt"><mapping></span>B<span class="nt"></mapping></span>
<span class="nt"><beads></span>
1:DOD:C9 1:DOD:C10
<span class="nt"></beads></span>
<span class="nt"></cg_bead></span>
<span class="nt"><cg_bead></span>
<span class="nt"><name></span>A2<span class="nt"></name></span>
<span class="nt"><type></span>A<span class="nt"></type></span>
<span class="nt"><mapping></span>A<span class="nt"></mapping></span>
<span class="nt"><beads></span>
1:DOD:C11 1:DOD:C12
<span class="nt"></beads></span>
<span class="nt"></cg_bead></span>
<span class="nt"></cg_beads></span>
<span class="nt"><cg_bonded></span>
<span class="nt"><bond></span>
<span class="nt"><name></span>bond<span class="nt"></name></span>
<span class="nt"><beads></span>
A1 B1
A2 B4
B1 B2
B2 B3
B3 B4
<span class="nt"></beads></span>
<span class="nt"></bond></span>
<span class="nt"><angle></span>
<span class="nt"><name></span>angle_ch3<span class="nt"></name></span>
<span class="nt"><beads></span>
A1 B1 B2
B3 B4 A2
<span class="nt"></beads></span>
<span class="nt"></angle></span>
<span class="nt"><angle></span>
<span class="nt"><name></span>angle_ch2<span class="nt"></name></span>
<span class="nt"><beads></span>
B1 B2 B3
B2 B3 B4
<span class="nt"></beads></span>
<span class="nt"></angle></span>
<span class="nt"><dihedral></span>
<span class="nt"><name></span>dihedral<span class="nt"></name></span>
<span class="nt"><beads></span>
A1 B1 B2 B3
B1 B2 B3 B4
B2 B3 B4 A2
<span class="nt"></beads></span>
<span class="nt"></dihedral></span>
<span class="nt"></cg_bonded></span>
<span class="nt"></topology></span>
<span class="nt"><maps></span>
<span class="nt"><map></span>
<span class="nt"><name></span>A<span class="nt"></name></span>
<span class="nt"><weights></span>15.035 14.027<span class="nt"></weights></span>
<span class="nt"></map></span>
<span class="nt"><map></span>
<span class="nt"><name></span>B<span class="nt"></name></span>
<span class="nt"><weights></span>14.027 14.027<span class="nt"></weights></span>
<span class="nt"></map></span>
<span class="nt"></maps></span>
<span class="nt"></cg_molecule></span>
</pre></div>
</div>
<div class="section" id="settings">
<h3><cite><settings></cite><a class="headerlink" href="#settings" title="Permalink to this headline">¶</a></h3>
<p>First we have to surround whole file with <code class="code xml docutils literal notranslate"><span class="name tag"><span class="pre"><settings></span></span></code> tag:</p>
<div class="highlight-xml notranslate"><div class="highlight"><pre><span></span><span class="nt"><settings></span>
<span class="nt"><cg_molecule></span>
...
<span class="nt"></cg_molecule></span>
<span class="nt"></settings></span>
</pre></div>
</div>
</div>
<div class="section" id="cg-molecule">
<h3><cite><cg_molecule></cite><a class="headerlink" href="#cg-molecule" title="Permalink to this headline">¶</a></h3>
<p>Next, we have to set up source coordinate file for each of molecule. We add tag <code class="code xml docutils literal notranslate"><span class="name tag"><span class="pre"><source_file></span></span></code> and <code class="code xml docutils literal notranslate"><span class="name tag"><span class="pre"><source_topology></span></span></code>
which defines topology of atomistic fragment.</p>
<div class="highlight-xml notranslate"><div class="highlight"><pre><span></span><span class="nt"><cg_molecule></span>
...
<span class="nt"><source_coordinate><file></span>dodecane_single.gro<span class="nt"></file></file></source_coordinate></span>
<span class="nt"><source_topology><file></span>topol.top<span class="nt"></file></source_topology></span>
...
<span class="nt"></cg_molecule></span>
</pre></div>
</div>
<p>There could be multiple <code class="code xml docutils literal notranslate"><span class="name tag"><span class="pre"><cg_molecule></span></span></code> sections that will describe different types of atomistic molecule.</p>
</div>
<div class="section" id="cg-configuration">
<h3><cite><cg_configuration></cite><a class="headerlink" href="#cg-configuration" title="Permalink to this headline">¶</a></h3>
<p>After the list of CG molecules, we have to define
input format and a name of file of CG coordinate file that is reverse mapped.</p>
<div class="highlight-xml notranslate"><div class="highlight"><pre><span></span><span class="nt"><cg_molecule></span>
...
<span class="nt"></cg_molecule></span>
<span class="nt"><cg_configuration></span>
<span class="nt"><coordinate></span>cg_conf.gro<span class="nt"></coordinate></span>
<span class="nt"><topology></span>cg_topol.top<span class="nt"></topology></span>
<span class="nt"></cg_configuration></span>
...
</pre></div>
</div>
</div>
<div class="section" id="hybrid-configuration">
<h3><cite><hybrid_configuration></cite><a class="headerlink" href="#hybrid-configuration" title="Permalink to this headline">¶</a></h3>
<p>This section describes output hybrid coordinate file. Currently we support only GROMACS output file.</p>
<div class="highlight-xml notranslate"><div class="highlight"><pre><span></span><span class="nt"><hybrid_configuration></span>
<span class="nt"><file></span>hyb_conf.gro<span class="nt"></file></span>
<span class="nt"></hybrid_configuration></span>
</pre></div>
</div>
<p>In this block above we define that the output hybrid coordinate file will be stored in <cite>hyb_conf.gro</cite>.</p>
</div>
<div class="section" id="hybrid-topology">
<h3><cite><hybrid_topology></cite><a class="headerlink" href="#hybrid-topology" title="Permalink to this headline">¶</a></h3>
<p>The options for output hybrid topology file are defined in tag <code class="code xml docutils literal notranslate"><span class="name tag"><span class="pre"><hybrid_topology></span></span></code>. Very simple example is shown below.</p>
<div class="highlight-xml notranslate"><div class="highlight"><pre><span></span><span class="nt"><hybrid_topology></span>
<span class="nt"><file></span>hyb_topol.top<span class="nt"></file></span>
<span class="nt"><include></span>
#include "/usr/share/gromacs/top/oplsaa.ff/forcefield.itp"
<span class="nt"></include></span>
<span class="nt"><molecule_type></span>
<span class="nt"><name></span>PE<span class="nt"></name></span>
<span class="nt"><exclusion></span>3<span class="nt"></exclusion></span>
<span class="nt"></molecule_type></span>
<span class="nt"><system></span>PE<span class="nt"></system></span>
<span class="nt"></hybrid_topology></span>
</pre></div>
</div>
<p>Here we define that output file is <cite>hyb_topol.top</cite>. We define include section in <code class="code xml docutils literal notranslate"><span class="name tag"><span class="pre"><include></include></span></span></code>. <code class="code xml docutils literal notranslate"><span class="name tag"><span class="pre"><molecule_type></span></span></code> tag defines the name of molecule in <cite><name></cite> tag and the exclusion rule. In this case, every particle that is separated by 1, 2, 3 bonds will be excluded from non-bonded interactions. This follows the <a class="reference external" href="http://www.gromacs.org/">GROMACS</a> <a class="footnote-reference" href="#id4" id="id5">[2]</a> rules (see <a class="reference external" href="http://www.gromacs.org/Documentation/Manual">GROMACS manual</a> <a class="footnote-reference" href="#id6" id="id7">[3]</a> for further information).</p>
</div>
</div>
<div class="section" id="network-backmapping">
<h2>Network backmapping<a class="headerlink" href="#network-backmapping" title="Permalink to this headline">¶</a></h2>
<p>This example is based on backampping of epoxy-like network, built with two components:
bisphenol A diglycidyl ether and isophrone diamine.
Full settings can be found in <a class="reference download internal" download="" href="_downloads/432fdf5888a710e80e9f8ca4bcb5e250/settings_rim135.xml"><code class="xref download docutils literal notranslate"><span class="pre">settings_network.xml</span></code></a>.
Here we only denote important sections.</p>
<div class="section" id="source-coordinate-and-source-topology">
<h3><cite><source_coordinate></cite> and <cite><source_topology></cite><a class="headerlink" href="#source-coordinate-and-source-topology" title="Permalink to this headline">¶</a></h3>
<div class="highlight-xml notranslate"><div class="highlight"><pre><span></span><span class="nt"><source_coordinate></span>
<span class="nt"><file</span> <span class="na">molecule_degree=</span><span class="s">"0"</span><span class="nt">></span>epon-828.gro<span class="nt"></file></span>
<span class="nt"><file</span> <span class="na">molecule_degree=</span><span class="s">"1"</span> <span class="na">when=</span><span class="s">"A1"</span><span class="nt">></span>epon-828_deg1_A1.gro<span class="nt"></file></span>
<span class="nt"><file</span> <span class="na">molecule_degree=</span><span class="s">"1"</span> <span class="na">when=</span><span class="s">"A2"</span><span class="nt">></span>epon-828_deg1_A2.gro<span class="nt"></file></span>
<span class="nt"><file</span> <span class="na">molecule_degree=</span><span class="s">"2"</span><span class="nt">></span>epon-828_deg2.gro<span class="nt"></file></span>
<span class="nt"></source_coordinate></span>
</pre></div>
</div>
<p><cite>source_coordinate</cite> and <cite>source_topology</cite> defines the atomistic fragments to use.
The appropriate file is selected depends on the molecule degree and the connected coarse-grained
bead.
In this case, the epoxied molecule is coarse-grained into three beads <cite>A1-B1-A2</cite>.
During the chemical reaction, either <cite>A1</cite> or <cite>A2</cite> can be linked to other molecules and base on this
the appropriate fragment will be selected.
The same structure is in the case of <cite>source_topology</cite>.</p>
</div>
<div class="section" id="cg-bead">
<h3><cite><cg_bead></cite><a class="headerlink" href="#cg-bead" title="Permalink to this headline">¶</a></h3>
<div class="highlight-xml notranslate"><div class="highlight"><pre><span></span><span class="nt"><cg_bead></span>
<span class="nt"><name></span>A1<span class="nt"></name></span>
<span class="nt"><type></span>A<span class="nt"></type></span>
<span class="nt"><beads</span> <span class="na">degree=</span><span class="s">"1"</span> <span class="na">molecule_degree=</span><span class="s">"0"</span><span class="nt">></span>
1:EPO:C1 1:EPO:O1 1:EPO:C2 1:EPO:H1 1:EPO:H2 1:EPO:H3 1:EPO:C3 1:EPO:O2 1:EPO:H23 1:EPO:H24
<span class="nt"></beads></span>
<span class="nt"><beads</span> <span class="na">degree=</span><span class="s">"2"</span> <span class="na">active_site=</span><span class="s">"EPO:C1:4"</span> <span class="na">molecule_degree=</span><span class="s">"1,2"</span><span class="nt">></span>
1:EPO:C1 1:EPO:O1 1:EPO:C2 1:EPO:H1 1:EPO:H2 1:EPO:H3 1:EPO:C3 1:EPO:O2 1:EPO:H23 1:EPO:H24
1:EPO:H25
<span class="nt"></beads></span>
<span class="nt"></cg_bead></span>
</pre></div>
</div>
<p>Here we put the list of atoms that will be taken from the fragment (with bonds, angles, dihedrals).
We can define multiple bead lists that will vary with <strong>degree</strong> and <strong>molecule_degree</strong>.</p>
<p>If the bead at CG level is reactive then we have to define an <strong>active_site</strong>, the atoms from the bead
that will be use to make a connection at atomistic level.
The concept of active sites is illustrated below:</p>
<img alt="_images/ipd_epon_scheme.png" src="_images/ipd_epon_scheme.png" />
<div class="section" id="charge-map">
<h4><cite><charge_map></cite><a class="headerlink" href="#charge-map" title="Permalink to this headline">¶</a></h4>
<p>The partial charges for the atoms can be defined in the input topology file or at the level of <code class="code xml docutils literal notranslate"><span class="name tag"><span class="pre"><beads></span></span></code> tag by
including <code class="code xml docutils literal notranslate"><span class="name tag"><span class="pre"><charge_map></charge_map></span></span></code> tag.</p>
<div class="highlight-xml notranslate"><div class="highlight"><pre><span></span><span class="nt"><beads</span> <span class="na">degree=</span><span class="s">"1"</span> <span class="na">molecule_degree=</span><span class="s">"0"</span><span class="nt">></span>
1:EPO:C1 1:EPO:O1 1:EPO:C2 1:EPO:H1 1:EPO:H2 1:EPO:H3 1:EPO:C3 1:EPO:O2 1:EPO:H23 1:EPO:H24
<span class="nt"><charge_map></span>
0.0 0.0 * * * * * * * *
<span class="nt"></charge_map></span>
<span class="nt"></beads></span>
</pre></div>
</div>
<p>The number of elements in the charge map has to correspond number of atoms in the fragment.
We can define explicitly the particla charge for atom or we can declare that the charge for this atom
will be taken from the topology by using star character <strong>*</strong>.</p>
<p>The charges per fragment can be equilibrated by definigin the attribute <code class="code xml docutils literal notranslate"><span class="pre">equilibrate_charges="1"</span></code> in <code class="code xml docutils literal notranslate"><span class="name tag"><span class="pre"><cg_molecule></span></span></code> tag:</p>
<div class="highlight-xml notranslate"><div class="highlight"><pre><span></span><span class="nt"><cg_molecule</span> <span class="na">equilibrate_charges=</span><span class="s">"1"</span><span class="nt">></span>
...
</pre></div>
</div>
<p><strong>References</strong></p>
<table class="docutils footnote" frame="void" id="id1" rules="none">
<colgroup><col class="label" /><col /></colgroup>
<tbody valign="top">
<tr><td class="label">[1]</td><td><em>(<a class="fn-backref" href="#id2">1</a>, <a class="fn-backref" href="#id3">2</a>)</em> <a class="reference external" href="http://votca.org/">http://votca.org/</a></td></tr>
</tbody>
</table>
<table class="docutils footnote" frame="void" id="id4" rules="none">
<colgroup><col class="label" /><col /></colgroup>
<tbody valign="top">
<tr><td class="label"><a class="fn-backref" href="#id5">[2]</a></td><td><a class="reference external" href="http://www.gromacs.org/">http://www.gromacs.org/</a></td></tr>
</tbody>
</table>
<table class="docutils footnote" frame="void" id="id6" rules="none">
<colgroup><col class="label" /><col /></colgroup>
<tbody valign="top">
<tr><td class="label"><a class="fn-backref" href="#id7">[3]</a></td><td><a class="reference external" href="http://www.gromacs.org/Documentation/Manual">http://www.gromacs.org/Documentation/Manual</a></td></tr>
</tbody>
</table>
</div>
</div>
</div>
</div>
</div>
</div>
<footer>
<div class="rst-footer-buttons" role="navigation" aria-label="footer navigation">
<a href="xml_structure.html" class="btn btn-neutral float-right" title="XML settings file" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right"></span></a>
<a href="method.html" class="btn btn-neutral" title="Method" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left"></span> Previous</a>
</div>
<hr/>
<div role="contentinfo">
<p>
© Copyright 2015-2018, Jakub Krajniak. Documentation version:
</p>
</div>
Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a <a href="https://github.com/rtfd/sphinx_rtd_theme">theme</a> provided by <a href="https://readthedocs.org">Read the Docs</a>.
</footer>
</div>
</div>
</section>
</div>
<script type="text/javascript" id="documentation_options" data-url_root="./" src="_static/documentation_options.js"></script>
<script type="text/javascript" src="_static/jquery.js"></script>
<script type="text/javascript" src="_static/underscore.js"></script>
<script type="text/javascript" src="_static/doctools.js"></script>
<script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.1/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script>
<script type="text/javascript" src="_static/js/theme.js"></script>
<script type="text/javascript">
jQuery(function () {
SphinxRtdTheme.Navigation.enable(false);
});
</script>
</body>
</html>