Update with AmgXWrapper-1.4

* Update version of AmgXWrapper (from `1.0-beta2` to `1.4`).
* Update calls to AmgXWrapper routines (due to changes in API).
* AmgXWrapper-1.4 requires to use PETSc-3.8+. Therefore, when configuring with AmgX, use PETSc-3.8+.
* When checking for AmgX, find and keep only the first occurrence of `libamgxsh.so`.
* When configuring with AmgX, do not check the version of OpenMPI anymore.
* Do not check for Doxygen.
* Bump version of PetIBM to 0.2.1

Author: mesnardo

CHANGELOG.md

@@ -1,5 +1,29 @@
 # PetIBM Change Log
 
+
+---
+
+## 0.2.1
+
+---
+
+### Added
+
+### Changed
+
+* Update version of AmgXWrapper (from `1.0-beta2` to `1.4`).
+* Update calls to AmgXWrapper routines (due to changes in API).
+* AmgXWrapper-1.4 requires to use PETSc-3.8+. Therefore, when configuring with AmgX, use PETSc-3.8+.
+
+### Fixed
+
+* When checking for AmgX, find and keep only the first occurrence of `libamgxsh.so`.
+
+### Removed
+
+* When configuring with AmgX, do not check the version of OpenMPI anymore.
+* Do not check for Doxygen.
+
 ---
 
 ## 0.2.0

Makefile.in

@@ -87,10 +87,8 @@ PRE_UNINSTALL = :
 POST_UNINSTALL = :
 subdir = .
 ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/m4/check_version_openmpi.m4 \
-	$(top_srcdir)/m4/configure_amgx.m4 \
+am__aclocal_m4_deps = $(top_srcdir)/m4/configure_amgx.m4 \
 	$(top_srcdir)/m4/configure_cuda.m4 \
-	$(top_srcdir)/m4/configure_doxygen.m4 \
 	$(top_srcdir)/m4/configure_petsc.m4 \
 	$(top_srcdir)/m4/package_utilities.m4 \
 	$(top_srcdir)/configure.ac
@@ -229,15 +227,12 @@ CXXFLAGS = @CXXFLAGS@
 CYGPATH_W = @CYGPATH_W@
 DEFS = @DEFS@
 DEPDIR = @DEPDIR@
-DOXYGEN = @DOXYGEN@
-DOXYGEN_DIR = @DOXYGEN_DIR@
 ECHO_C = @ECHO_C@
 ECHO_N = @ECHO_N@
 ECHO_T = @ECHO_T@
 EGREP = @EGREP@
 EXEEXT = @EXEEXT@
 GREP = @GREP@
-HAVE_DOXYGEN = @HAVE_DOXYGEN@
 INSTALL = @INSTALL@
 INSTALL_DATA = @INSTALL_DATA@
 INSTALL_PROGRAM = @INSTALL_PROGRAM@

README.md

@@ -19,7 +19,7 @@ PetIBM solves the incompressible Navier-Stokes equations in two and three dimens
 ## Dependencies (last tested)
 
 * g++-4.9.2, g++-5.4.0
-* [PETSc](https://www.mcs.anl.gov/petsc/) 3.7.4
+* [PETSc](https://www.mcs.anl.gov/petsc/) 3.8.1
 * Python 2.7 (optional, for pre- and post-processing)
 
 Note: Python and libraries have been installed using [`conda`](http://conda.pydata.org/docs/get-started.html) (4.3.1).

aclocal.m4

@@ -1246,9 +1246,7 @@ AC_SUBST([am__tar])
 AC_SUBST([am__untar])
 ]) # _AM_PROG_TAR
 
-m4_include([m4/check_version_openmpi.m4])
 m4_include([m4/configure_amgx.m4])
 m4_include([m4/configure_cuda.m4])
-m4_include([m4/configure_doxygen.m4])
 m4_include([m4/configure_petsc.m4])
 m4_include([m4/package_utilities.m4])