PIPs/docker-compose.yml at main · bartongroup/PIPs · GitHub

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services:
  mariadb:
    image: mariadb:10.11
    platform: linux/amd64
    container_name: pips-mariadb
    environment:
      MARIADB_ROOT_PASSWORD: rootpassword
      MARIADB_DATABASE: nucleolar
      MARIADB_USER: pips
      MARIADB_PASSWORD: pipspassword
    volumes:
      - mariadb-data:/var/lib/mysql
      - ./mariadb/nucleolar:/docker-entrypoint-initdb.d:ro
    ports:
      - "3306:3306"
    healthcheck:
      test: ["CMD-SHELL", "mariadb-admin ping -h localhost -u root -prootpassword || exit 1"]
      interval: 10s
      timeout: 5s
      retries: 5

  webapp:
    build: .
    platform: linux/amd64
    container_name: pips-webapp
    ports:
      - "8080:8080"
    depends_on:
      mariadb:
        condition: service_healthy
    environment:
      # Database connection
      - DB_HOST=mariadb
      - DB_PORT=3306
      - DB_NAME=nucleolar
      - DB_USER=pips
      - DB_PASSWORD=pipspassword
      # BLAST search paths
      - BLAST_SCRIPT_PATH=/opt/pips/bin/run_blast_simple.pl
      - BLAST_DB_PATH=/opt/pips/database/prot_human
      - BLAST_QUERY_DIR=/opt/pips/query

volumes:
  mariadb-data:
    name: pips-mariadb-data