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ci.yml
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name: CI
on:
push:
branches:
- main
pull_request:
types:
- opened
- synchronize
- reopened
workflow_dispatch:
defaults:
run:
shell: bash -l {0}
env:
CACHE_NUMBER: 1
jobs:
frontend-readiness:
name: Frontend linting / readiness checks
# Defines the type of runner the job runs on
runs-on: ubuntu-latest
permissions:
contents: read
steps:
- name: Checkout to the repository
uses: actions/checkout@v3
- name: Cache conda
uses: actions/cache@v3
with:
path: ~/conda_pkgs_dir
key: ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ hashFiles('environment-dev.yml') }}
- name: Setup miniconda
uses: conda-incubator/setup-miniconda@v2.2.0
with:
environment-file: environment-dev.yml
activate-environment: galaxy
use-only-tar-bz2: true
- name: Set up NodeJS environment
uses: actions/setup-node@v3
with:
node-version: '20.12.2'
# Consider this as an add on to optimize the execution of actions
- name: Cache node modules
id: cache-npm
uses: actions/cache@v3
env:
cache-name: cache-node-modules
with:
# npm cache files are stored in `~/.npm` on Linux/macOS
path: ~/.npm
key: ${{ runner.os }}-build-${{ env.cache-name }}-${{ hashFiles('**/package-lock.json') }}
restore-keys: |
${{ runner.os }}-build-${{ env.cache-name }}-
${{ runner.os }}-build-
${{ runner.os }}-
- name: Install package dependencies
run: npm ci
working-directory: ./frontend
- name: Check linting and formatting
# Custom script for checking the linting and formatting being in place
run: npm run lint
working-directory: ./frontend
- name: Check TypeScript types
run: npx tsc --noEmit
working-directory: ./frontend
- name: Verify generated types are up-to-date
run: |
# Run the type generation script (conda environment 'galaxy' is already activated)
./generate_types.sh
# Check if any files were modified
git diff --exit-code src/api/_autogen/ || (echo "ERROR: Generated TypeScript types are out of date. Please run ./generate_types.sh and commit the changes." && exit 1)
working-directory: ./frontend
lint:
name: Linter (pre-commit)
runs-on: ubuntu-latest
permissions:
contents: read
steps:
- name: Checkout branch
uses: actions/checkout@v3.1.0
- name: Cache conda
uses: actions/cache@v3
with:
path: ~/conda_pkgs_dir
key: ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ hashFiles('environment-dev.yml') }}
- name: Setup miniconda
uses: conda-incubator/setup-miniconda@v2.2.0
with:
environment-file: environment-dev.yml
activate-environment: galaxy
use-only-tar-bz2: true
- name: Set up NodeJS environment
uses: actions/setup-node@v3
with:
node-version: '20.12.2'
- name: Cache node modules
id: cache-npm
uses: actions/cache@v3
env:
cache-name: cache-node-modules
with:
# npm cache files are stored in `~/.npm` on Linux/macOS
path: ~/.npm
key: ${{ runner.os }}-build-${{ env.cache-name }}-${{ hashFiles('**/package-lock.json') }}
restore-keys: |
${{ runner.os }}-build-${{ env.cache-name }}-
${{ runner.os }}-build-
${{ runner.os }}-
- name: Install frontend dependencies for pre-commit
run: npm ci
working-directory: ./frontend
- name: Run linter
run: |
pre-commit install
pre-commit run -a
unit-test-backend:
name: Backend unit tests
runs-on: ubuntu-latest
permissions:
contents: read
steps:
- name: Checkout branch
uses: actions/checkout@v3.1.0
- name: Cache conda
uses: actions/cache@v3
with:
path: ~/conda_pkgs_dir
key: ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ hashFiles('environment-dev.yml') }}
- name: Setup miniconda
uses: conda-incubator/setup-miniconda@v2.2.0
with:
environment-file: environment-dev.yml
activate-environment: galaxy
use-only-tar-bz2: true
- name: Initialize migrations
run: ./manage.py makemigrations
working-directory: ./backend
- name: Run tests
run: find * -type f -name "test*.py" | sed "s/\.py$//g" | sed "s/\//./g" | xargs coverage run --branch --source='.' ./manage.py test -v=2
working-directory: ./backend
- name: Report coverage
run: coverage report
working-directory: ./backend