doc wip: update content

Author: vpratz

CONTRIBUTING.md

@@ -141,7 +141,7 @@ The documentation uses [sphinx](https://www.sphinx-doc.org/) and relies on [nump
 You need to install the following python packages for setting up documentation generation:
 
 ```
-pip install sphinx numpydoc myst-nb sphinx_design sphinx-book-theme
+pip install sphinx numpydoc myst-nb sphinx_design sphinx-book-theme sphinxcontrib-bibtex
 ```
 
 The overall *structure* of the documentation is manually designed. This also applies to the API documentation. This has two implications for you:

docsrc/source/api/bayesflow.rst

@@ -11,15 +11,17 @@ Autosummary
     :template: custom-module-template.rst
     :recursive:
 
+   bayesflow.adapters
    bayesflow.approximators
    bayesflow.benchmarks
-   bayesflow.configurators
    bayesflow.datasets
    bayesflow.diagnostics
    bayesflow.distributions
    bayesflow.metrics
    bayesflow.networks
    bayesflow.simulators
+   bayesflow.types
+   bayesflow.utils
 
 
 Submodules
@@ -28,15 +30,17 @@ Submodules
 .. toctree::
    :maxdepth: 2
 
+   bayesflow.adapters
    bayesflow.approximators
    bayesflow.benchmarks
-   bayesflow.configurators
    bayesflow.datasets
    bayesflow.diagnostics
    bayesflow.distributions
    bayesflow.metrics
    bayesflow.networks
    bayesflow.simulators
+   bayesflow.types
+   bayesflow.utils
 
 Miscellaneous
 -------------
@@ -49,4 +53,4 @@ Miscellaneous
 I added a citation here to test the bibtex extension, :cite:t:`radev2023bayesflow`.
 
 ```{bibliography}
-```
+```

docsrc/source/examples.rst

@@ -10,11 +10,9 @@ The corresponding Jupyter Notebooks are available :mainbranch:`here <examples/>`
    :glob:
    :numbered:
 
-   _examples/Intro_Amortized_Posterior_Estimation.ipynb
-   _examples/TwoMoons_Bimodal_Posterior.ipynb
-   _examples/Model_Misspecification.ipynb
-   _examples/LCA_Model_Posterior_Estimation.ipynb
-   _examples/Linear_ODE_system.ipynb
-   _examples/Covid19_Initial_Posterior_Estimation.ipynb
-   _examples/Model_Comparison_MPT.ipynb
-   _examples/Hierarchical_Model_Comparison_MPT.ipynb
+   _examples/Quickstart_Amortized_Posterior_Estimation.ipynb
+   _examples/TwoMoons_StarterNotebook.ipynb
+   _examples/SIR_PosteriorEstimation.ipynb
+   _examples/Linear_Regression.ipynb
+   _examples/Hyperparameter_Optimization.ipynb
+   _examples/Bayesian_Experimental_Design.ipynb

docsrc/source/index.rst

@@ -40,7 +40,7 @@ BayesFlow requires Python version 3.9 or later.
 The installer should automatically choose the appropriate TensorFlow version depending on your operating system.
 However, if the installation fails, Tensorflow and Tensorflow-Probability are likely to be the culprit,
 and you might consider starting your bug hunt there.
-You can find detailed installation instructions for developers :doc:`here <installation>`.
+You can find detailed installation instructions for developers :doc:`here <contributing>`.
 
 
 Citation
@@ -120,6 +120,5 @@ Indices
    self
    examples
    api/bayesflow
-   installation
    contributing
    about