Merge dependency groups, sort dependencies within groups

Author: jameskrach

pyproject.toml

@@ -17,28 +17,26 @@ classifiers = [
     "Programming Language :: Python :: 3.13",
 ]
 dependencies = [
-    "scikit-learn>=1.0.0,<2.0.0",
+    "colorama>=0.4.6,<1.0.0",
     "numpy>=1.25; python_version<'3.13'",
     "numpy>=2.1.3; python_version>='3.13'",
+    "scikit-learn>=1.0.0,<2.0.0",
     "scipy>=1.0.0,<2.0.0; python_version<'3.13'",
     "scipy>=1.14.1,<2.0.0; python_version>='3.13'",
-    "colorama>=0.4.6,<1.0.0",
 ]
 
 [project.optional-dependencies]
 dev = [
-    "pytest>=8.0.0,<9.0",
-    "pytest-cov>=4.1.0,<5.0",
     "coverage>=7.4.1,<8.0",
-    "ruff==0.6.6",
-    "pre-commit>=3.7.1,<4.0",
-]
-nbtools = [
-    "nbformat>=5.9.2,<6.0",
-    "nbconvert>=7.14.2,<8.0",
     "jupyter>=1.0.0,<2.0",
     "matplotlib>=3.0,<4.0",
+    "nbconvert>=7.14.2,<8.0",
+    "nbformat>=5.9.2,<6.0",
     "nbsphinx>=0.9.4,<1.0",
+    "pre-commit>=3.7.1,<4.0",
+    "pytest>=8.0.0,<9.0",
+    "pytest-cov>=4.1.0,<5.0",
+    "ruff==0.6.6",
     "sphinx-immaterial>=0.12.0,<1.0",
     "sphinx>=7.0.0,<8.0; python_version<'3.10'",
     "sphinx>=8.0.0,<9.0; python_version>='3.10'",