fix gazelle package deletion

Author: aignas

.bazelrc.deleted_packages

@@ -25,9 +25,18 @@ common --deleted_packages=examples/pip_repository_annotations
 common --deleted_packages=examples/py_proto_library
 common --deleted_packages=examples/py_proto_library/example.com/another_proto
 common --deleted_packages=examples/py_proto_library/example.com/proto
+common --deleted_packages=gazelle
 common --deleted_packages=gazelle/examples/bzlmod_build_file_generation
 common --deleted_packages=gazelle/examples/bzlmod_build_file_generation/other_module/other_module/pkg
 common --deleted_packages=gazelle/examples/bzlmod_build_file_generation/runfiles
+common --deleted_packages=gazelle/manifest
+common --deleted_packages=gazelle/manifest/generate
+common --deleted_packages=gazelle/manifest/hasher
+common --deleted_packages=gazelle/manifest/test
+common --deleted_packages=gazelle/modules_mapping
+common --deleted_packages=gazelle/python
+common --deleted_packages=gazelle/pythonconfig
+common --deleted_packages=gazelle/python/private
 common --deleted_packages=tests/integration/compile_pip_requirements
 common --deleted_packages=tests/integration/compile_pip_requirements_test_from_external_repo
 common --deleted_packages=tests/integration/custom_commands

tools/update_deleted_packages.sh

@@ -23,18 +23,19 @@
 #   2. For each of the directories, get all directories that contains a BUILD.bazel file.
 #   3. Sort and remove duplicates.
 
-set -euo pipefail
+set -euxo pipefail
 
 DIR="$(dirname $0)/.."
 cd $DIR
 
 # The sed -i.bak pattern is compatible between macos and linux
 {
     echo "# Generated via './tools/update_deleted_packages.sh'"
-    find examples/*/* tests/*/* gazelle/examples/*/* \( -name WORKSPACE -or -name MODULE.bazel \) |
+    find examples tests gazelle \( -name WORKSPACE -or -name MODULE.bazel \) |
         xargs -n 1 dirname |
         xargs -I{} find {} \( -name BUILD -or -name BUILD.bazel \) |
         xargs -n 1 dirname |
+        grep -v "gazelle/docs" |
         sort -u |
         sed 's/^/common --deleted_packages=/g' 
-} > "$DIR"/.bazelrc.deleted_packages
+} | tee "$DIR"/.bazelrc.deleted_packages