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Added github actions
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‎.github/.DS_Store‎

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‎.github/dependabot.yml‎

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version: 2
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updates:
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# Maintain dependencies for GitHub Actions
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- package-ecosystem: "github-actions"
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directory: "/"
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schedule:
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interval: "daily"
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- package-ecosystem: "docker"
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directory: "/"
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schedule:
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interval: "daily"

‎.github/pull_request_template.md‎

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<!---
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This is a suggested pull request template for picachooser
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It's designed to capture information we've found to be useful in reviewing pull requests.
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If there is other information that would be helpful to include, please don't hesitate to add it!
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Please also label your pull request with the relevant tags.
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See here for more information and a list of available options:
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http://picachooser.readthedocs.io/en/latest/contributing.html#pull-requests
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-->
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Closes # .
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Changes proposed in this pull request:
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-
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-

‎.github/workflows/codeql-analysis.yml‎

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# For most projects, this workflow file will not need changing; you simply need
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# to commit it to your repository.
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#
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# You may wish to alter this file to override the set of languages analyzed,
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# or to provide custom queries or build logic.
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#
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# ******** NOTE ********
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# We have attempted to detect the languages in your repository. Please check
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# the `language` matrix defined below to confirm you have the correct set of
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# supported CodeQL languages.
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#
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name: "CodeQL"
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on:
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push:
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branches: [ main ]
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pull_request:
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# The branches below must be a subset of the branches above
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branches: [ main ]
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schedule:
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- cron: '29 18 * * 6'
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jobs:
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analyze:
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name: Analyze
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runs-on: ubuntu-latest
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permissions:
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actions: read
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contents: read
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security-events: write
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strategy:
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fail-fast: false
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matrix:
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language: [ 'python' ]
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# CodeQL supports [ 'cpp', 'csharp', 'go', 'java', 'javascript', 'python' ]
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# Learn more:
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# https://docs.github.com/en/free-pro-team@latest/github/finding-security-vulnerabilities-and-errors-in-your-code/configuring-code-scanning#changing-the-languages-that-are-analyzed
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steps:
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- name: Checkout repository
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uses: actions/[email protected]
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# Initializes the CodeQL tools for scanning.
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- name: Initialize CodeQL
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uses: github/codeql-action/init@v3
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with:
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languages: ${{ matrix.language }}
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# If you wish to specify custom queries, you can do so here or in a config file.
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# By default, queries listed here will override any specified in a config file.
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# Prefix the list here with "+" to use these queries and those in the config file.
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# queries: ./path/to/local/query, your-org/your-repo/queries@main
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# Autobuild attempts to build any compiled languages (C/C++, C#, or Java).
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# If this step fails, then you should remove it and run the build manually (see below)
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- name: Autobuild
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uses: github/codeql-action/autobuild@v3
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# ℹ️ Command-line programs to run using the OS shell.
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# 📚 https://git.io/JvXDl
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# ✏️ If the Autobuild fails above, remove it and uncomment the following three lines
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# and modify them (or add more) to build your code if your project
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# uses a compiled language
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#- run: |
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# make bootstrap
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# make release
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- name: Perform CodeQL Analysis
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uses: github/codeql-action/analyze@v3

‎.github/workflows/codespell.yml‎

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# Codespell configuration is within pyproject.toml
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---
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name: Codespell
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on:
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push:
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branches: [main]
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pull_request:
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branches: [main]
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permissions:
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contents: read
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jobs:
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codespell:
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name: Check for spelling errors
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runs-on: ubuntu-latest
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steps:
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- name: Checkout
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uses: actions/checkout@v4
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- name: Annotate locations with typos
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uses: codespell-project/codespell-problem-matcher@v1
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- name: Codespell
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uses: codespell-project/actions-codespell@v2

‎.github/workflows/docker-build-latest.yml‎

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name: Upload latest to DockerHub
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on:
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push:
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branches:
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- 'main'
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jobs:
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docker:
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runs-on: ubuntu-latest
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steps:
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- name: Set up QEMU
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uses: docker/setup-qemu-action@v3
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- name: Install GitVersion
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uses: gittools/actions/gitversion/[email protected]
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with:
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versionSpec: '5.x'
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- name: Install Checkout
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uses: actions/[email protected]
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with:
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ref: ${{ github.head_ref }} # checkout the correct branch name
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fetch-depth: 0
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- name: Determine Version
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id: gitversion # id to later be referenced
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uses: gittools/actions/gitversion/[email protected]
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with:
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additionalArguments: /config commit-date-format="yyyy-MM-ddTHH:mm:ss-0000"
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- name: Alternate Git Version
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id: alternategitversion
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uses: codacy/[email protected]
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with:
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release-branch: 'main'
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prefix: 'v'
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- name: Direct Git Version
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id: directgitversion
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run: |
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GITDIRECTVERSION=`git describe --tags --dirty`
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echo "GITDIRECTVERSION=${GITDIRECTVERSION}" >> $GITHUB_ENV
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- name: Display GitVersion outputs (step output)
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run: |
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GITSHA=${{ steps.gitversion.outputs.Sha }}
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GITSHA8=${GITSHA:0:8}
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GITCOMMITS=${{ steps.gitversion.outputs.CommitsSinceVersionSource }}
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GITPREVVERSION=${{ steps.alternategitversion.outputs.previous-version }}
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GITVERSION=${GITPREVVERSION}+${GITCOMMITS}.g${GITSHA8}
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GITTIME=`git show | grep Date | head -n 1 | awk '{print $5 $7}'`
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GITDATE=${{ steps.gitversion.outputs.commitDate }}"T"${GITTIME}
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echo "GITVERSION=${GITVERSION}" >> $GITHUB_ENV
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echo "GITSHA=${GITSHA}" >> $GITHUB_ENV
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echo "GITDATE=${GITDATE}" >> $GITHUB_ENV
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BUILD_TIME=$(date -Iseconds)
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echo "BUILD_TIME=${BUILD_TIME}" >> $GITHUB_ENV
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- name: What
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run: echo "BRANCH=${GITHUB_REF##*/}" >> $GITHUB_ENV
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- name: Set up Docker Buildx
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uses: docker/setup-buildx-action@v3
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- name: Login to DockerHub
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uses: docker/login-action@v3
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with:
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username: ${{ secrets.DOCKERHUB_USERNAME }}
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password: ${{ secrets.DOCKERHUB_TOKEN }}
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- name: Get version number
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id: get_version
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run: echo "VERSION=${{ github.ref }}" >> $GITHUB_OUTPUT
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- name: Free disk space
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run: |
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df -h
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sudo rm -rf ${GITHUB_WORKSPACE}/.git
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sudo swapoff -a
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sudo rm -f /swapfile
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sudo apt clean
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sudo rm -rf /usr/share/dotnet
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sudo rm -rf "$AGENT_TOOLSDIRECTORY"
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df -h
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- name: Build and push
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id: docker_build
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uses: docker/build-push-action@v6
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with:
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platforms: linux/amd64,linux/arm64
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push: true
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sbom: true
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provenance: true
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cache-from: type=gha
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cache-to: type=gha,mode=max
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tags: fredericklab/stabilitycalc:latest
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build-args: |
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BRANCH=${{ env.BRANCH }}
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GITVERSION=${{ env.GITVERSION }}
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GITSHA=${{ env.GITSHA }}
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GITDATE=${{ env.GITDATE }}
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BUILD_TIME=${{ env.BUILD_TIME }}

‎.github/workflows/docker-build-on-release.yml‎

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name: Upload release to DockerHub
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on:
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release:
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types: [published]
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jobs:
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docker:
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runs-on: ubuntu-latest
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steps:
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- name: Set up QEMU
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uses: docker/setup-qemu-action@v3
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- name: Set up Docker Buildx
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uses: docker/setup-buildx-action@v3
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- name: Login to DockerHub
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uses: docker/login-action@v3
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with:
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username: ${{ secrets.DOCKERHUB_USERNAME }}
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password: ${{ secrets.DOCKERHUB_TOKEN }}
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- name: Extract metadata (tags, labels) for Docker
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id: meta
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uses: docker/metadata-action@v5
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with:
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images: fredericklab/stabilitycalc
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- name: Free disk space
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run: |
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df -h
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sudo rm -rf ${GITHUB_WORKSPACE}/.git
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sudo swapoff -a
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sudo rm -f /swapfile
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sudo apt clean
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sudo rm -rf /usr/share/dotnet
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sudo rm -rf "$AGENT_TOOLSDIRECTORY"
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df -h
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- name: Build and push
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id: docker_build
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uses: docker/build-push-action@v6
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with:
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platforms: linux/amd64,linux/arm64
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push: true
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sbom: true
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provenance: true
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cache-from: type=gha
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cache-to: type=gha,mode=max
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tags: |
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${{ steps.meta.outputs.tags }}
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fredericklab/picachooser:latest-release
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labels: ${{ steps.meta.outputs.labels }}

‎.github/workflows/python-publish.yml‎

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# This workflow will upload a Python Package using Twine when a release is created
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# For more information see: https://help.github.com/en/actions/language-and-framework-guides/using-python-with-github-actions#publishing-to-package-registries
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name: Upload Python Package
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on:
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release:
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types: [created]
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jobs:
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deploy:
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runs-on: ubuntu-latest
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steps:
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- uses: actions/[email protected]
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- name: Set up Python
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uses: actions/setup-python@v5
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with:
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python-version: '3.7'
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- name: Install dependencies
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run: |
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python -m pip install --upgrade pip
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pip install setuptools wheel twine
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- name: Build and publish
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env:
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TWINE_USERNAME: ${{ secrets.PYPI_USERNAME }}
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TWINE_PASSWORD: ${{ secrets.PYPI_PASSWORD }}
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run: |
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python setup.py sdist bdist_wheel
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twine upload dist/*

‎.github/workflows/showversion.yml‎

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name: Show git version
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on:
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workflow_dispatch:
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push:
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branches: [ main ]
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jobs:
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showversion:
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runs-on: ubuntu-latest
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steps:
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- name: Install GitVersion
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uses: gittools/actions/gitversion/[email protected]
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with:
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versionSpec: '5.x'
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- name: Install Checkout
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uses: actions/[email protected]
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with:
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ref: ${{ github.head_ref }} # checkout the correct branch name
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fetch-depth: 0
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- name: Determine Version
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id: gitversion # id to later be referenced
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uses: gittools/actions/gitversion/[email protected]
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with:
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additionalArguments: /config commit-date-format="yyyy-MM-ddTHH:mm:ss-0000"
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- name: Alternate Git Version
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id: alternategitversion
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uses: codacy/[email protected]
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with:
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release-branch: 'main'
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prefix: 'v'
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- name: Direct Git Version
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id: directgitversion
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run: |
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GITDIRECTVERSION=`git describe --tags --dirty`
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echo "GITDIRECTVERSION=${GITDIRECTVERSION}" >> $GITHUB_ENV
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- name: Display GitVersion outputs (step output)
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run: |
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GITSHA=${{ steps.gitversion.outputs.Sha }}
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GITSHA8=${GITSHA:0:8}
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GITCOMMITS=${{ steps.gitversion.outputs.CommitsSinceVersionSource }}
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GITPREVVERSION=${{ steps.alternategitversion.outputs.previous-version }}
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GITVERSION=${GITPREVVERSION}+${GITCOMMITS}.g${GITSHA8}
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GITTIME=`git show | grep Date | head -n 1 | awk '{print $5 $7}'`
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GITDATE=${{ steps.gitversion.outputs.commitDate }}"T"${GITTIME}
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BUILD_TIME=$(date -Iseconds)
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echo "BUILD_TIME=${BUILD_TIME}" >> $GITHUB_ENV
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echo "GITVERSION: ${GITVERSION}"
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echo "GITDIRECTVERSION: ${{ env.GITDIRECTVERSION}}"
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echo "GITSHA: ${GITSHA}"
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echo "GITCOMMITS: ${GITCOMMITS}"
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echo "GITSHA8: ${GITSHA8}"
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echo "GITDATE: ${GITDATE}"

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