Fixed typos

Author: bbfrederick

stabilitycalc.py

@@ -494,7 +494,7 @@ def qualitypercent(n, basis, lim):
     periph_dt_qualitytag = qualitypercent(periphstddev_dt, periphmean_dt, 'peripheral_roi_detrended_std%')
     periphpp_dt_qualitytag = qualitypercent(periphpp_dt, periphmean_dt, 'peripheral_roi_detrended_p-p%')
 
-    # do calculations regarding angular dependance
+    # do calculations regarding angular dependence
     meanangperiphval = np.mean(periphangmeans)
     meanangperiphsfnr = np.mean(periphangsfnrs)
     meanangperiphsnr = np.mean(avgperiphsnrvec)

stabilityfuncs.py

@@ -285,7 +285,7 @@ def smooth(x, window_len=11, window='hanning'):
     This method is based on the convolution of a scaled window with the signal.
     The signal is prepared by introducing reflected copies of the signal 
     (with the window size) in both ends so that transient parts are minimized
-    in the begining and end part of the output signal.
+    in the beginning and end part of the output signal.
 
     input:
         x: the input signal 

stabilitysummary.py

@@ -28,7 +28,7 @@ def stabilitysummary(datadirectory, outputdirectory, whichscan, TargetisBIRNphan
                                                                                      whichscan,
                                                                                      '' if TargetisBIRNphantom else '--nonbirn'))
 
-    # initialize the outut directory if need be
+    # initialize the output directory if need be
     if not os.path.exists(pjoin(outputdirectory, whichscan)):
         os.makedirs(pjoin(outputdirectory, whichscan))
 

tpl/individual.html

@@ -3,7 +3,7 @@
     <h3>Maximum sensitivity region ROI Analysis</h3>
 
     <p>This is an analysis of the temporal fluctuation in the ROI of maximum sensitivity for the individual coil
-        element. A 3 x 3 x 1 voxel is automatically postioned at the center of gravity, and the average voxel value is
+        element. A 3 x 3 x 1 voxel is automatically positioned at the center of gravity, and the average voxel value is
         plotted a function of time. Linear and quadratic terms are fit to the drift. The voxel statistics are reported
         with and without the drift removed. </p>
     <tr>
@@ -34,4 +34,4 @@ <h3>Maximum sensitivity region ROI Analysis</h3>
             <p><a href="maxlocroisnrplot.png"><IMG BORDER=0 SRC=maxlocroisnrplot.png width="500"></a></p>
         </td>
     </tr>
-</table>
+</table>

unused/findavgvalues

@@ -85,7 +85,7 @@ if len(sys.argv) != 3:
 datadirectory = sys.argv[1]
 outputdirectory = sys.argv[2]
 
-# initialize the outut directory if need be
+# initialize the output directory if need be
 
 #
 # scan the data directory for stability scans