-* `sge.yaml` contains the definition for a conda environment that will allow you to run the various scripts and programs in the pipeline. Assuming you have a working `conda` installation already (not covered here), run `conda env create -f sge.yaml` to create the environment named `sge`. Once the environment has been created, run `conda activate sge` to activate and use the environment. Note that this `activate` command needs to be run every time you login to use the SGE pipeline (or set up to be run automatically); it is NOT a one-time command.
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