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TomBlockTomBlock
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initial sic insitu
1 parent fe5899e commit 2fcbeac

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7 files changed

+267
-2
lines changed

7 files changed

+267
-2
lines changed

‎core/src/main/java/com/bc/fiduceo/reader/insitu/sic_cci/SicCciInsituReader.java‎

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package com.bc.fiduceo.reader.insitu.sic_cci;
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import com.bc.fiduceo.core.Dimension;
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import com.bc.fiduceo.core.Interval;
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import com.bc.fiduceo.geometry.Polygon;
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import com.bc.fiduceo.location.PixelLocator;
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import com.bc.fiduceo.reader.AcquisitionInfo;
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import com.bc.fiduceo.reader.Reader;
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import com.bc.fiduceo.reader.time.TimeLocator;
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import ucar.ma2.Array;
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import ucar.ma2.ArrayInt;
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import ucar.ma2.InvalidRangeException;
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import ucar.nc2.Variable;
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import java.io.BufferedReader;
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import java.io.File;
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import java.io.FileReader;
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import java.io.IOException;
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import java.util.ArrayList;
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import java.util.List;
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public class SicCciInsituReader implements Reader {
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private static final String REG_EX = "ASCAT-vs-AMSR2-vs-ERA5-vs-DMISIC0-\\d{4}-[N|S].text";
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private FileReader fileReader;
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private ArrayList<String> linelist;
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@Override
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public void open(File file) throws IOException {
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fileReader = new FileReader(file);
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linelist = new ArrayList<>();
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final BufferedReader bufferedReader = new BufferedReader(fileReader);
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String line;
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while ((line = bufferedReader.readLine()) != null) {
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linelist.add(line);
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}
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}
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@Override
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public void close() throws IOException {
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if (linelist != null) {
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linelist.clear();
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linelist = null;
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}
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if (fileReader != null) {
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fileReader.close();
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fileReader = null;
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}
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}
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@Override
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public AcquisitionInfo read() throws IOException {
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throw new RuntimeException("not implemented");
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}
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@Override
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public String getRegEx() {
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return REG_EX;
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}
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@Override
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public PixelLocator getPixelLocator() throws IOException {
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throw new RuntimeException("not implemented");
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}
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@Override
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public PixelLocator getSubScenePixelLocator(Polygon sceneGeometry) throws IOException {
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throw new RuntimeException("not implemented");
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}
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@Override
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public TimeLocator getTimeLocator() throws IOException {
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throw new RuntimeException("not implemented");
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}
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@Override
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public int[] extractYearMonthDayFromFilename(String fileName) {
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throw new RuntimeException("not implemented");
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}
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@Override
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public Array readRaw(int centerX, int centerY, Interval interval, String variableName) throws IOException, InvalidRangeException {
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throw new RuntimeException("not implemented");
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}
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@Override
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public Array readScaled(int centerX, int centerY, Interval interval, String variableName) throws IOException, InvalidRangeException {
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throw new RuntimeException("not implemented");
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}
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@Override
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public ArrayInt.D2 readAcquisitionTime(int x, int y, Interval interval) throws IOException, InvalidRangeException {
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throw new RuntimeException("not implemented");
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}
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@Override
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public List<Variable> getVariables() throws InvalidRangeException, IOException {
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throw new RuntimeException("not implemented");
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}
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@Override
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public Dimension getProductSize() throws IOException {
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throw new RuntimeException("not implemented");
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}
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@Override
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public String getLongitudeVariableName() {
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return "longitude";
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}
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@Override
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public String getLatitudeVariableName() {
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return "latitude";
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}
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}

‎core/src/main/java/com/bc/fiduceo/reader/insitu/sic_cci/SicCciInsituReaderPlugin.java‎

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package com.bc.fiduceo.reader.insitu.sic_cci;
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import com.bc.fiduceo.reader.DataType;
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import com.bc.fiduceo.reader.Reader;
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import com.bc.fiduceo.reader.ReaderContext;
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import com.bc.fiduceo.reader.ReaderPlugin;
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public class SicCciInsituReaderPlugin implements ReaderPlugin {
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private final String[] SUPPORTED_KEYS = {"sic-cci-dmisic0"};
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@Override
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public Reader createReader(ReaderContext readerContext) {
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return new SicCciInsituReader();
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}
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@Override
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public String[] getSupportedSensorKeys() {
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return SUPPORTED_KEYS;
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}
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@Override
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public DataType getDataType() {
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return DataType.INSITU;
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}
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}

‎core/src/test/java/com/bc/fiduceo/reader/insitu/gruan_uleic/GruanUleicInsituReaderPluginTest.java‎

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@@ -35,5 +35,4 @@ public void testCreateReader() {
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assertNotNull(reader);
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assertTrue(reader instanceof GruanUleicInsituReader);
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}
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}

‎core/src/test/java/com/bc/fiduceo/reader/insitu/gruan_uleic/GruanUleicInsituReader_IO_Test.java‎

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@@ -48,7 +48,7 @@ public void tearDown() throws IOException {
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}
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@Test
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public void testReadAcquisitionInfo() throws IOException {
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public void testReadAcquisitionInfo() {
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final AcquisitionInfo info = reader.read();
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assertNotNull(info);
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‎core/src/test/java/com/bc/fiduceo/reader/insitu/sic_cci/SciCciInsituReaderPluginTest.java‎

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package com.bc.fiduceo.reader.insitu.sic_cci;
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import com.bc.fiduceo.reader.DataType;
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import com.bc.fiduceo.reader.Reader;
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import org.junit.Before;
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import org.junit.Test;
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import static org.junit.Assert.*;
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import static org.junit.Assert.assertTrue;
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public class SciCciInsituReaderPluginTest {
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private SicCciInsituReaderPlugin plugin;
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@Before
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public void setUp() {
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plugin = new SicCciInsituReaderPlugin();
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}
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@Test
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public void testGetSupportedSensorKeys() {
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final String[] expected = {"sic-cci-dmisic0"};
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final String[] sensorKeys = plugin.getSupportedSensorKeys();
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assertArrayEquals(expected, sensorKeys);
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}
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@Test
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public void testGetDataType() {
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assertEquals(DataType.INSITU, plugin.getDataType());
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}
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@Test
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public void testCreateReader() {
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final Reader reader = plugin.createReader(null);
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assertNotNull(reader);
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assertTrue(reader instanceof SicCciInsituReader);
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}
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}

‎core/src/test/java/com/bc/fiduceo/reader/insitu/sic_cci/SciCciInsituReader_IO_Test.java‎

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package com.bc.fiduceo.reader.insitu.sic_cci;
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import com.bc.fiduceo.IOTestRunner;
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import com.bc.fiduceo.TestUtil;
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import org.junit.Before;
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import org.junit.Test;
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import org.junit.runner.RunWith;
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import java.io.File;
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import java.io.IOException;
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@RunWith(IOTestRunner.class)
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public class SciCciInsituReader_IO_Test {
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private SicCciInsituReader reader;
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@Before
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public void setUp() {
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reader = new SicCciInsituReader();
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}
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@Test
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public void testReadAcquisitionInfo() throws IOException {
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final String relativePath = TestUtil.assembleFileSystemPath(new String[]{"insitu", "sic-cci", "DMI_SIC0", "v3", "ASCAT-vs-AMSR2-vs-ERA5-vs-DMISIC0-2016-N.text"}, false);
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final File testFile = TestUtil.getTestDataFileAsserted(relativePath);
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try {
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reader.open(testFile);
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} finally {
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reader.close();
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}
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}
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}

‎core/src/test/java/com/bc/fiduceo/reader/insitu/sic_cci/SicCciInsituReaderTest.java‎

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package com.bc.fiduceo.reader.insitu.sic_cci;
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import org.junit.Before;
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import org.junit.Test;
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import java.util.regex.Matcher;
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import java.util.regex.Pattern;
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import static org.junit.Assert.*;
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import static org.junit.Assert.assertFalse;
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public class SicCciInsituReaderTest {
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private SicCciInsituReader reader;
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@Before
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public void setUp() {
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reader = new SicCciInsituReader();
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}
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@Test
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public void testGetRegEx() {
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final String expected = "ASCAT-vs-AMSR2-vs-ERA5-vs-DMISIC0-\\d{4}-[N|S].text";
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assertEquals(expected, reader.getRegEx());
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final Pattern pattern = Pattern.compile(expected);
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Matcher matcher = pattern.matcher("ASCAT-vs-AMSR2-vs-ERA5-vs-DMISIC0-2017-N.text");
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assertTrue(matcher.matches());
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matcher = pattern.matcher("ASCAT-vs-AMSR2-vs-ERA5-vs-DMISIC0-2018-S.text");
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assertTrue(matcher.matches());
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matcher = pattern.matcher("insitu_0_WMOID_42531_19960904_19960909.nc");
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assertFalse(matcher.matches());
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matcher = pattern.matcher("190546533.NSS.HIRX.NL.D11235.S1235.E1422.B5628788.WI.nc");
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assertFalse(matcher.matches());
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}
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@Test
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public void testGetLongitudeVariableName() {
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assertEquals("longitude", reader.getLongitudeVariableName());
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}
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@Test
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public void testGetLatitudeVariableName() {
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assertEquals("latitude", reader.getLatitudeVariableName());
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}
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}

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