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started matchup integration test
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‎matchup-tool/src/test/java/com/bc/fiduceo/matchup/MatchupToolIntegrationTest_SMOSL1_sic_cci.java‎

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package com.bc.fiduceo.matchup;
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import com.bc.fiduceo.FiduceoConstants;
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import com.bc.fiduceo.NCTestUtils;
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import com.bc.fiduceo.TestUtil;
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import com.bc.fiduceo.core.SatelliteObservation;
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import com.bc.fiduceo.core.Sensor;
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import com.bc.fiduceo.core.UseCaseConfig;
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import com.bc.fiduceo.db.DbAndIOTestRunner;
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import com.bc.fiduceo.util.NetCDFUtils;
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import org.apache.commons.cli.ParseException;
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import org.junit.Test;
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import org.junit.runner.RunWith;
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import ucar.ma2.InvalidRangeException;
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import ucar.nc2.NetcdfFile;
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import java.io.File;
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import java.io.IOException;
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import java.sql.SQLException;
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import java.util.ArrayList;
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import java.util.List;
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import static org.junit.Assert.assertEquals;
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import static org.junit.Assert.assertTrue;
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@RunWith(DbAndIOTestRunner.class)
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public class MatchupToolIntegrationTest_SMOSL1_sic_cci extends AbstractUsecaseIntegrationTest {
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@Test
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public void testMatchup() throws IOException, SQLException, ParseException, InvalidRangeException {
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final UseCaseConfig useCaseConfig = createUseCaseConfigBuilder()
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.withTimeDeltaSeconds(28800, null)
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.withMaxPixelDistanceKm(10, null)
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.createConfig();
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final File useCaseConfigFile = storeUseCaseConfig(useCaseConfig, "usecase-44.xml");
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insert_SIC_CCI();
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insert_miras_CDF3TA();
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final String[] args = new String[]{"-c", configDir.getAbsolutePath(), "-u", useCaseConfigFile.getName(), "-start", "2016-156", "-end", "2016-156"};
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MatchupToolMain.main(args);
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final File mmdFile = getMmdFilePath(useCaseConfig, "2016-156", "2016-156");
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assertTrue(mmdFile.isFile());
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// @todo 1 tb/tb continue with assertions here 2022-11-14
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// try (NetcdfFile mmd = NetcdfFile.open(mmdFile.getAbsolutePath())) {
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// final int matchupCount = NetCDFUtils.getDimensionLength(FiduceoConstants.MATCHUP_COUNT, mmd);
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// assertEquals(15, matchupCount);
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//
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// NCTestUtils.assert3DVariable("drifter-sirds_acquisition_time", 0, 0, 0, 1511146800, mmd);
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// NCTestUtils.assert3DVariable("drifter-sirds_collection", 0, 0, 1, 1, mmd);
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// NCTestUtils.assert3DVariable("drifter-sirds_depth", 0, 0, 2, 0.2, mmd);
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// NCTestUtils.assert3DVariable("drifter-sirds_depth_corr", 0, 0, 3, 0.0, mmd);
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// NCTestUtils.assert3DVariable("drifter-sirds_latitude", 0, 0, 4, -25.63, mmd);
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// NCTestUtils.assert3DVariable("drifter-sirds_longitude", 0, 0, 5, -151.32001, mmd);
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// NCTestUtils.assert3DVariable("drifter-sirds_prof_id", 0, 0, 6, 633946, mmd);
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// NCTestUtils.assert3DVariable("drifter-sirds_qc1", 0, 0, 7, 0, mmd);
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// NCTestUtils.assert3DVariable("drifter-sirds_qc2", 0, 0, 8, -99, mmd);
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// NCTestUtils.assert3DVariable("drifter-sirds_sst", 0, 0, 9, 30.100000381469727, mmd);
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// NCTestUtils.assert3DVariable("drifter-sirds_sst_comb_unc", 0, 0, 10, 0.3895, mmd);
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// NCTestUtils.assert3DVariable("drifter-sirds_sst_plat_corr", 0, 0, 11, 0.0, mmd);
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// NCTestUtils.assert3DVariable("drifter-sirds_sst_plat_corr", 0, 0, 12, 0.0, mmd);
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// NCTestUtils.assert3DVariable("drifter-sirds_sst_plat_corr_unc", 0, 0, 12, 0.29, mmd);
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// NCTestUtils.assert3DVariable("drifter-sirds_sst_rand_unc", 0, 0, 13, 0.26, mmd);
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//
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// NCTestUtils.assert3DVariable("miras-smos-CDF3TD_Azimuth_Angle_025", 0, 0, 0, -32768, mmd);
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// NCTestUtils.assert3DVariable("miras-smos-CDF3TD_BT_3_075", 1, 0, 1, -32768, mmd);
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// NCTestUtils.assert3DVariable("miras-smos-CDF3TD_BT_4_125", 2, 0, 2, -32768, mmd);
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// NCTestUtils.assert3DVariable("miras-smos-CDF3TD_BT_H_175", 0, 1, 3, -32768, mmd);
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// NCTestUtils.assert3DVariable("miras-smos-CDF3TD_BT_V_225", 1, 1, 4, -32768, mmd);
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// NCTestUtils.assert3DVariable("miras-smos-CDF3TD_Days_275", 2, 1, 5, 6533, mmd);
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// NCTestUtils.assert3DVariable("miras-smos-CDF3TD_Eta_325", 0, 2, 6, -10148, mmd);
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// NCTestUtils.assert3DVariable("miras-smos-CDF3TD_Footprint_Axis1_375", 1, 2, 7, -16670, mmd);
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// NCTestUtils.assert3DVariable("miras-smos-CDF3TD_Footprint_Axis2_400", 2, 2, 8, -19158, mmd);
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// NCTestUtils.assert3DVariable("miras-smos-CDF3TD_Incidence_Angle_425", 0, 0, 9, -2487, mmd);
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// NCTestUtils.assert3DVariable("miras-smos-CDF3TD_Nb_RFI_Flags_475", 1, 0, 10, 0, mmd);
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// NCTestUtils.assert3DVariable("miras-smos-CDF3TD_Nb_SUN_Flags_525", 2, 0, 11, 0, mmd);
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// NCTestUtils.assert3DVariable("miras-smos-CDF3TD_Nviews_575", 0, 1, 12, 14, mmd);
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// NCTestUtils.assert3DVariable("miras-smos-CDF3TD_Pixel_BT_Standard_Deviation_3_625", 1, 1, 13, -32768, mmd);
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// NCTestUtils.assert3DVariable("miras-smos-CDF3TD_lon", 2, 1, 13, -48.37175750732422, mmd);
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// NCTestUtils.assert3DVariable("miras-smos-CDF3TD_lat", 0, 2, 14, 36.3758544921875, mmd);
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// }
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}
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private void insert_SIC_CCI() throws IOException, SQLException {
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final String sensorKey = "DTUSIC1-sic-cci";
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final String relativeArchivePath = TestUtil.assembleFileSystemPath(new String[]{"insitu", "sic-cci", "DTUSIC1-sic-cci", "v3", "QSCAT-vs-SMAP-vs-SMOS-vs-ASCAT-vs-AMSR2-vs-ERA-vs-DTUSIC1-2016-N.text"}, true);
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final SatelliteObservation satelliteObservation = readSatelliteObservation(sensorKey, relativeArchivePath, "v3");
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storage.insert(satelliteObservation);
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}
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private void insert_miras_CDF3TA() throws IOException, SQLException {
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final String sensorKey = "miras-smos-CDF3TA";
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final String relativeArchivePath = TestUtil.assembleFileSystemPath(new String[]{sensorKey, "re07", "2016", "156", "SM_RE07_MIR_CDF3TA_20160604T000000_20160604T235959_330_001_7.tgz"}, true);
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final SatelliteObservation satelliteObservation = readSatelliteObservation(sensorKey, relativeArchivePath, "re07");
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storage.insert(satelliteObservation);
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}
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private MatchupToolTestUseCaseConfigBuilder createUseCaseConfigBuilder() {
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final List<Sensor> sensorList = new ArrayList<>();
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final Sensor primary = new Sensor("DTUSIC1-sic-cci");
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primary.setPrimary(true);
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sensorList.add(primary);
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sensorList.add(new Sensor("miras-smos-CDF3TA"));
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final List<com.bc.fiduceo.core.Dimension> dimensions = new ArrayList<>();
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dimensions.add(new com.bc.fiduceo.core.Dimension("DTUSIC1-sic-cci", 1, 1));
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dimensions.add(new com.bc.fiduceo.core.Dimension("miras-smos-CDF3TA", 3, 3));
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return (MatchupToolTestUseCaseConfigBuilder) new MatchupToolTestUseCaseConfigBuilder("mmd44")
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.withSensors(sensorList)
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.withOutputPath(new File(TestUtil.getTestDir().getPath(), "usecase-44").getPath())
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.withDimensions(dimensions);
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}
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}

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