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‎doc/doc.ipynb‎

Lines changed: 46 additions & 35 deletions
Original file line numberDiff line numberDiff line change
@@ -143,7 +143,7 @@
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" data=data.mean(dims),\n",
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" title=title,\n",
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" fn=f\"map-mean-{title}\",\n",
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" plot_size=(9.6, 3.6),\n",
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" plot_size=(7.2, 3.6),\n",
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" cbar_label=\"mean normalized error\",\n",
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" vmin=vmin,\n",
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" vmax=vmax,\n",
@@ -173,7 +173,7 @@
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" data=data.std(dims),\n",
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" title=title,\n",
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" fn=f\"map-std-{title}\",\n",
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" plot_size=(9.6, 3.6),\n",
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" plot_size=(7.2, 3.6),\n",
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" cbar_label=\"std. dev. normalized errors\",\n",
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" vmin=vmin,\n",
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" vmax=vmax,\n",
@@ -203,7 +203,7 @@
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" data=(data.max(dim=dims) - data.min(dim=dims)),\n",
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" title=title,\n",
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" fn=f\"map-range-{title}\",\n",
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" plot_size=(9.6, 3.6),\n",
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" plot_size=(7.2, 3.6),\n",
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" cbar_label=\"range of normalized errors\",\n",
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" vmin=vmin,\n",
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" vmax=vmax,\n",
@@ -216,9 +216,7 @@
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{
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"cell_type": "markdown",
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"id": "10",
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"metadata": {
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"jp-MarkdownHeadingCollapsed": true
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},
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"metadata": {},
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"source": [
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"# ESA SCOPE carbonate system (D. J. Ford)"
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]
@@ -350,9 +348,7 @@
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{
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"cell_type": "markdown",
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"id": "17",
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"metadata": {
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"jp-MarkdownHeadingCollapsed": true
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},
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"metadata": {},
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"source": [
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"# ESA CCI Ocean Colour"
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]
@@ -600,9 +596,7 @@
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{
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"cell_type": "markdown",
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"id": "24",
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"metadata": {
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"jp-MarkdownHeadingCollapsed": true
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},
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"metadata": {},
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"source": [
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"# GHRSST"
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]
@@ -639,6 +633,18 @@
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"id": "27",
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"metadata": {},
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"outputs": [],
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"source": [
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"ds_mean = ds.isel(i=0)\n",
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"ds_std = (ds - ds_mean).std(dim=\"i\")\n",
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"ds_target = "
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"id": "28",
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"metadata": {},
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"outputs": [],
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"source": [
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"config = {\n",
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" \"analysed_sst\": {\n",
@@ -652,7 +658,7 @@
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{
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"cell_type": "code",
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"execution_count": null,
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"id": "28",
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"id": "29",
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"metadata": {},
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"outputs": [],
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"source": [
@@ -665,7 +671,7 @@
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{
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"cell_type": "code",
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"execution_count": null,
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"id": "29",
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"id": "30",
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"metadata": {},
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"outputs": [],
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"source": [
@@ -711,7 +717,7 @@
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{
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"cell_type": "code",
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"execution_count": null,
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"id": "30",
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"id": "31",
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"metadata": {},
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"outputs": [],
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"source": [
@@ -720,7 +726,7 @@
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},
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{
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"cell_type": "markdown",
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"id": "31",
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"id": "32",
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"metadata": {
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"jp-MarkdownHeadingCollapsed": true
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},
@@ -731,7 +737,7 @@
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{
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"cell_type": "code",
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"execution_count": null,
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"id": "32",
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"id": "33",
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"metadata": {},
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"outputs": [],
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"source": [
@@ -748,7 +754,7 @@
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{
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"cell_type": "code",
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"execution_count": null,
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"id": "33",
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"id": "34",
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"metadata": {},
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"outputs": [],
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"source": [
@@ -758,7 +764,7 @@
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{
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"cell_type": "code",
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"execution_count": null,
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"id": "34",
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"id": "35",
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"metadata": {},
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"outputs": [],
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"source": [
@@ -773,7 +779,7 @@
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{
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"cell_type": "code",
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"execution_count": null,
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"id": "35",
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"id": "36",
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"metadata": {},
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"outputs": [],
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"source": [
@@ -786,7 +792,7 @@
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{
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"cell_type": "code",
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"execution_count": null,
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"id": "36",
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"id": "37",
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"metadata": {},
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"outputs": [],
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"source": [
@@ -832,7 +838,7 @@
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{
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"cell_type": "code",
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"execution_count": null,
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"id": "37",
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"id": "38",
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"metadata": {},
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"outputs": [],
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"source": [
@@ -841,25 +847,22 @@
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},
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{
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"cell_type": "markdown",
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"id": "38",
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"metadata": {
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"jp-MarkdownHeadingCollapsed": true
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},
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"id": "39",
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"metadata": {},
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"source": [
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"# ESA SCOPE PP parameters"
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"id": "39",
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"id": "40",
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"metadata": {},
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"outputs": [],
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"source": [
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"ds = xr.open_mfdataset(\n",
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" \"./PE_mro_mean_error_prv_4km_120p_spring_cor.*.nc\",\n",
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" engine=\"h5netcdf\",\n",
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" mask_and_scale=True,\n",
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" chunks={\"latitude\": 2160, \"lon\": 2160},\n",
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" combine=\"nested\",\n",
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" concat_dim=\"i\",\n",
@@ -869,7 +872,7 @@
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{
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"cell_type": "code",
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"execution_count": null,
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"id": "40",
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"id": "41",
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"metadata": {},
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"outputs": [],
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"source": [
@@ -879,28 +882,28 @@
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{
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"cell_type": "code",
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"execution_count": null,
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"id": "41",
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"id": "42",
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"metadata": {},
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"outputs": [],
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"source": [
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"config = {\n",
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" \"alphaB\": {\n",
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" \"uncertainty\": \"alphaB_unc\",\n",
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" \"distribution\": \"lognormal\",\n",
890-
" \"name\": \"alphaB\",\n",
893+
" \"name\": \"Initial slope of photosynthesis-irradiance curve\",\n",
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" },\n",
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" \"PmB\": {\n",
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" \"uncertainty\": \"PmB_unc\",\n",
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" \"distribution\": \"normal\",\n",
895-
" \"name\": \"PmB\",\n",
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" \"name\": \"Assimilation number of photosynthesis-irradiance curve\",\n",
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" }\n",
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"}"
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"id": "42",
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"id": "43",
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"metadata": {},
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"outputs": [],
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"source": [
@@ -913,7 +916,7 @@
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{
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"cell_type": "code",
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"execution_count": null,
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"id": "43",
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"id": "44",
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"metadata": {},
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"outputs": [],
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"source": [
@@ -959,12 +962,20 @@
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{
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"cell_type": "code",
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"execution_count": null,
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"id": "44",
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"id": "45",
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"metadata": {},
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"outputs": [],
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"source": [
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"ds.close()"
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"id": "46",
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"metadata": {},
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"outputs": [],
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"source": []
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}
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],
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"metadata": {

‎kaleidoscope/main/epocsodielak.py‎

Lines changed: 1 addition & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -246,9 +246,7 @@ def run(self, args: Namespace): # noqa: D102
246246
writer: Writing = self._create_writer(args)
247247

248248
# open the source file
249-
get_logger().debug(
250-
f"opening source dataset: {args.source_glob}"
251-
)
249+
get_logger().debug(f"opening source dataset: {args.source_glob}")
252250
source = reader.read(args.source_glob)
253251

254252
# create the processing graph

‎kaleidoscope/operators/derandop.py‎

Lines changed: 3 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -104,7 +104,9 @@ def run(self, source: Dataset) -> Dataset: # noqa: D102
104104
)
105105
if "standard_name" in target[v_unc].attrs:
106106
standard_name = target[v_unc].attrs["standard_name"]
107-
target[v_unc].attrs["standard_name"] = f"{standard_name} standard_error"
107+
target[v_unc].attrs[
108+
"standard_name"
109+
] = f"{standard_name} standard_error"
108110
return target
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@property

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