upd_revisions

Author: mouren.j

Chromatin_accessibility/Figures/supp_overlap_dnase_atac_4_species.ipynb

@@ -92,7 +92,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 15,
+   "execution_count": 2,
    "metadata": {},
    "outputs": [
     {

Chromatin_accessibility/Figures/supp_overlap_histones_hsap.ipynb

@@ -2,9 +2,21 @@
  "cells": [
   {
    "cell_type": "code",
-   "execution_count": 8,
+   "execution_count": 2,
    "metadata": {},
-   "outputs": [],
+   "outputs": [
+    {
+     "ename": "FileNotFoundError",
+     "evalue": "[Errno 2] No such file or directory: '/home/mouren/Data/article_repo_data/EE_selection/other_species/summary_files/EE_summary_mm39.tsv'",
+     "output_type": "error",
+     "traceback": [
+      "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
+      "\u001b[0;31mFileNotFoundError\u001b[0m                         Traceback (most recent call last)",
+      "Cell \u001b[0;32mIn [2], line 61\u001b[0m\n\u001b[1;32m     58\u001b[0m f\u001b[38;5;241m.\u001b[39mclose()\n\u001b[1;32m     60\u001b[0m mm_candidates \u001b[38;5;241m=\u001b[39m []\n\u001b[0;32m---> 61\u001b[0m \u001b[38;5;28;01mwith\u001b[39;00m \u001b[38;5;28;43mopen\u001b[39;49m\u001b[43m(\u001b[49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[38;5;124;43m/home/mouren/Data/article_repo_data/EE_selection/other_species/summary_files/EE_summary_mm39.tsv\u001b[39;49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[43m)\u001b[49m \u001b[38;5;28;01mas\u001b[39;00m f:\n\u001b[1;32m     62\u001b[0m     \u001b[38;5;28;01mfor\u001b[39;00m line \u001b[38;5;129;01min\u001b[39;00m f:\n\u001b[1;32m     63\u001b[0m         mm_candidates\u001b[38;5;241m.\u001b[39mappend(\u001b[38;5;28mint\u001b[39m(line\u001b[38;5;241m.\u001b[39mstrip()\u001b[38;5;241m.\u001b[39msplit()[\u001b[38;5;241m6\u001b[39m]))\n",
+      "\u001b[0;31mFileNotFoundError\u001b[0m: [Errno 2] No such file or directory: '/home/mouren/Data/article_repo_data/EE_selection/other_species/summary_files/EE_summary_mm39.tsv'"
+     ]
+    }
+   ],
    "source": [
     "### Packages and data\n",
     "from statannot import add_stat_annotation\n",
@@ -253,7 +265,7 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "base",
+   "display_name": "Python 3",
    "language": "python",
    "name": "python3"
   },
@@ -267,7 +279,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.9.16"
+   "version": "3.8.10"
   },
   "orig_nbformat": 4
  },