fix: fix the bug cache error

Author: benson1231

.github/workflows/main.yml

@@ -20,27 +20,11 @@ jobs:
       - name: Checkout repository
         uses: actions/checkout@v4
 
-      - name: Cache reference
-        id: cache-ref
-        uses: actions/cache@v4
-        with:
-          path: |
-            workflow/references/gene_annotations_113.csv
-            workflow/references/transcript_annotations_113.csv
-            workflow/references/transcriptome.idx
-          key: ref-v1-${{ hashFiles('init.sh') }}
-          restore-keys: |
-            ref-v1-
-
       - name: Run init.sh to build references
-        if: steps.cache-ref.outputs.cache-hit != 'true'
         run: |
           chmod +x init.sh  
           ./init.sh
 
-      - name: Debug references folder
-        run: ls -lh workflow/references || true
-
       - name: Show system resources
         run: |
           echo "===== CPU and memory ====="
@@ -69,15 +53,12 @@ jobs:
 
           echo "===== Snakemake Version ====="
           snakemake --version
-
           echo
           echo "===== Detailed Summary ====="
           snakemake --detailed-summary --configfile ../.test/config/config.yaml
-
           echo
           echo "===== Conda Environments Used ====="
           find .snakemake/conda -maxdepth 1 -type d -print || true
-
           echo
           echo "===== Conda Environment Package Versions ====="
           for env in .snakemake/conda/*; do