Skip to content

Commit b7ada19

Browse files
turbomamturbomam
committed
Regenerate assignments with fresh randomization
1 parent 20a3fa1 commit b7ada19

File tree

3 files changed

+144
-144
lines changed

3 files changed

+144
-144
lines changed

‎assignments/curator1.tsv‎

Lines changed: 48 additions & 48 deletions
Original file line numberDiff line numberDiff line change
@@ -1,56 +1,56 @@
11
ID label TYPE parent class description definition source comment biolink equivalent confirmed exact synonym literature mining synonyms madin synonym or field synonym source bacdive keyword synonym bactotraits synonym
22
ID LABEL TYPE SC % A IAO:0000115 >A IAO:0000119 A rdfs:comment AI skos:closeMatch A oboInOwl:hasExactSynonym SPLIT=| A oboInOwl:hasRelatedSynonym SPLIT=| A oboInOwl:hasRelatedSynonym SPLIT=| >AI IAO:0000119 A oboInOwl:hasRelatedSynonym SPLIT=| A oboInOwl:hasRelatedSynonym SPLIT=|
33
METPO:1000059 phenotype owl:Class quality A (combination of) quality(ies) of an organism determined by the interaction of its genetic make-up and environment that differentiates specific instances of a species from other instances of the same species. OGMS:0000023 https://biolink.github.io/biolink-model/PhenotypicQuality
4-
METPO:1000332 pH range (cellular homeostasis) owl:Class phenotype The span of hydrogen ion concentrations within which a microorganism can maintain cellular homeostasis and sustain growth.
5-
METPO:1003001 neutrophilic owl:Class pH growth preference neutrophile|neutralophile|neutralophilic
6-
METPO:1003006 obligately acidophilic owl:Class pH growth preference obligate acidophile|obligately acidophilic
7-
METPO:1000334 NaCl range owl:Class phenotype The span of sodium chloride concentrations within which a microorganism can maintain osmotic balance and cellular functions.
8-
METPO:1001004 temperature delta observation owl:Class observation An observation specializing temperature observation for tolerance breadth (delta) data.
9-
METPO:1000628 extremely halophilic owl:Class halophily preference extreme-halophilic extremely halophilic
10-
METPO:1003011 osmophilic owl:Class trophic type high solute
11-
METPO:1000700 gram variable owl:Class gram stain variable
12-
METPO:1002002 Mn(IV)-dependent methane oxidation owl:Class Metal and metalloid respiration
13-
METPO:1000684 spiral shaped owl:Class cell shape spiral https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv spiral-shaped s_curved_spiral
14-
METPO:1000805 Electron transfer owl:Class metabolism
15-
METPO:1000682 spore shaped owl:Class cell shape spore-shaped
16-
METPO:1003000 pH growth preference owl:Class phenotype
17-
METPO:1000695 tailed shaped owl:Class cell shape tailed
18-
METPO:1000683 sphere shaped owl:Class cell shape https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv sphere-shaped s_sphere
19-
METPO:1002008 Nitrogen fixation owl:Class Nitrogen compound respiration nitrogen_fixation diazotroph
20-
METPO:1000804 Substrate-level phosphorylation owl:Class metabolism
21-
METPO:1000731 nutrient adaptation trophic type
22-
METPO:1000525 microbe owl:Class material entity An organism or virus or viron that is too small to be viewed by the unaided eye. OHMI:0000460 METPO is primarily concerned with unicellular, prokaryotic life forms, i.e. bacteria and archea, including the cases of giant bacteria like Thiomargarita https://biolink.github.io/biolink-model/OrganismTaxon
23-
METPO:1000670 curved shaped owl:Class cell shape https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv curved-shaped s_curved_spiral
24-
METPO:1000689 disc shaped owl:Class cell shape disc
25-
METPO:1000659 photoorganoheterotrophic owl:Class trophic type photoorganoheterotroph
26-
METPO:1000658 photolithotrophic owl:Class trophic type photolithotroph
27-
METPO:1002001 Fe(III)-dependent methane oxidation owl:Class Metal and metalloid respiration
28-
METPO:1001104 biosafety level 3 owl:Class biosafety level
29-
METPO:1000329 temperature optimum (metabolic activity) owl:Class biological process The specific temperature at which a microorganism exhibits maximum metabolic activity and growth rate within its viable range.
30-
METPO:1000667 bacillus shaped owl:Class cell shape bacillus
31-
METPO:1002005 Fermentation owl:Class respiration
4+
METPO:1000674 filament shaped owl:Class cell shape filament https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv filament-shaped s_filament
5+
METPO:1000127 GC content owl:Class quality The percentage of guanine and cytosine nucleotides in DNA
6+
METPO:1000656 photoautotrophic owl:Class trophic type photoautotrophy|anoxygenic_photoautotrophy_hydrogen_oxidation|anoxygenic_photoautotrophy_sulfur_oxidation|anoxygenic_photoautotrophy|anoxygenic_photoautotrophy_iron_oxidation photoautotroph
327
METPO:1000693 spirochete shaped owl:Class cell shape spirochete
33-
METPO:1000235 pH range (growth tolerance) owl:Class phenotype The span of pH values within which an organism can grow
34-
METPO:1000694 square shaped owl:Class cell shape square
35-
METPO:1000675 flask shaped owl:Class cell shape flask flask-shaped
36-
METPO:1001102 biosafety level 1 owl:Class biosafety level
37-
METPO:1000844 Methanogenesis owl:Class metabolism Carbonate respiration|Biomethanation|Biological methanation methanogenesis
8+
METPO:1000803 Oxidative phosphorylation owl:Class metabolism
9+
METPO:1000652 mixotrophic owl:Class trophic type mixotroph
10+
METPO:1000639 chemolithotrophic owl:Class trophic type chemolithotroph
11+
METPO:1000800 respiration owl:Class metabolism An organism's observable and characteristic method of performing cellular respiration, distinguished primarily by the specific terminal electron acceptor its metabolic pathways utilize for the purpose of producing cellular energy. pathways
3812
METPO:1000671 diplococcus shaped owl:Class cell shape diplococcus-shaped
39-
METPO:1000676 helical shaped owl:Class cell shape helical-shaped
13+
METPO:1000659 photoorganoheterotrophic owl:Class trophic type photoorganoheterotroph
14+
METPO:1000236 pH tolerance owl:Class phenotype The ability of an organism to survive exposure to pH values outside its optimal growth range
15+
METPO:1000673 ellipsoidal owl:Class cell shape ellipsoidal
16+
METPO:1000622 halotolerant owl:Class halophily preference halotolerant halotolerant
17+
METPO:1000658 photolithotrophic owl:Class trophic type photolithotroph
18+
METPO:1003003 acidophilic owl:Class pH growth preference acidophile|acidophil
19+
METPO:1000684 spiral shaped owl:Class cell shape spiral https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv spiral-shaped s_curved_spiral
20+
METPO:1000692 spindle shaped owl:Class cell shape spindle
4021
METPO:1000655 organotrophic owl:Class trophic type organotroph
41-
METPO:1000704 flagellated owl:Class motile flagella
22+
METPO:1000706 gliding owl:Class motile gliding
23+
METPO:1000871 spore forming owl:Class sporulation yes yes
24+
METPO:1000657 photoheterotrophic owl:Class trophic type photoheterotrophy photoheterotroph
25+
METPO:1003011 osmophilic owl:Class trophic type high solute
26+
METPO:1003001 neutrophilic owl:Class pH growth preference neutrophile|neutralophile|neutralophilic
27+
METPO:1000697 gram stain owl:Class phenotype gram_stain Morphology.cell morphology.gram stain|General.keywords
28+
METPO:1000636 chemoheterotrophic owl:Class trophic type aerobic_chemo_heterotrophy chemoheterotroph
29+
METPO:1000628 extremely halophilic owl:Class halophily preference extreme-halophilic extremely halophilic
30+
METPO:1000329 temperature optimum (metabolic activity) owl:Class biological process The specific temperature at which a microorganism exhibits maximum metabolic activity and growth rate within its viable range.
31+
METPO:1000333 NaCl optimum owl:Class phenotype The specific concentration of sodium chloride at which a microorganism exhibits maximum growth rate and metabolic efficiency.
32+
METPO:1000644 heterotrophic owl:Class trophic type heterotrophic|aerobic_heterotrophy heterotroph
33+
METPO:1000660 phototrophic owl:Class trophic type aerobic_anoxygenic_phototrophy phototroph
34+
METPO:1000845 Acetogenesis owl:Class metabolism Acetate fermentation acetogenesis
35+
METPO:1000802 Anaerobic respiration owl:Class respiration Anoxic respiration|Dissimilatory respiration (non-O₂)
36+
METPO:1000621 haloalkaliphilic owl:Class halophily preference haloalkaliphilic
37+
METPO:1003000 pH growth preference owl:Class phenotype
38+
METPO:1000233 pH optimum (growth range) owl:Class phenotype The specific pH at which an organism exhibits maximum growth rate
4239
METPO:1000669 crescent shaped owl:Class cell shape crescent-shaped
43-
METPO:1000633 carboxydotrophic owl:Class trophic type
44-
METPO:1000649 lithotrophic owl:Class trophic type lithotroph
40+
METPO:1001005 culture temperature observation owl:Class observation An observation specializing temperature observation for culture temperature data (e.g., reported culture conditions).
41+
METPO:1000664 organoheterotrophic owl:Class trophic type organoheterotroph
42+
METPO:1002002 Mn(IV)-dependent methane oxidation owl:Class Metal and metalloid respiration
43+
METPO:1003013 radiophilic owl:Class trophic type high radiation
44+
METPO:1000700 gram variable owl:Class gram stain variable
45+
METPO:1000332 pH range (cellular homeostasis) owl:Class phenotype The span of hydrogen ion concentrations within which a microorganism can maintain cellular homeostasis and sustain growth.
46+
METPO:1003002 alkaphilic owl:Class pH growth preference alkaliphilic|alkaliphile|alkalophilic|alkalophile
4547
METPO:1000666 cell shape owl:Class phenotype cell_shape Morphology.cell morphology.cell shape|General.keywords
46-
METPO:1000673 ellipsoidal owl:Class cell shape ellipsoidal
47-
METPO:1000236 pH tolerance owl:Class phenotype The ability of an organism to survive exposure to pH values outside its optimal growth range
48-
METPO:1000845 Acetogenesis owl:Class metabolism Acetate fermentation acetogenesis
49-
METPO:1000620 halophilic owl:Class halophily preference halophilic halophilic
50-
METPO:1000870 sporulation owl:Class phenotype sporulation Physiology and metabolism.spore formation.spore formation|General.keywords
51-
METPO:1000640 chemoorganoheterotrophic owl:Class trophic type chemoorganoheterotroph
52-
METPO:1003010 xerophilic owl:Class trophic type low H2O availability
53-
METPO:1000657 photoheterotrophic owl:Class trophic type photoheterotrophy photoheterotroph
54-
METPO:1000696 triangular shaped owl:Class cell shape triangular
55-
METPO:1000654 oligotrophic owl:Class nutrient adaptation oligotroph
56-
METPO:1000642 copiotrophic owl:Class nutrient adaptation copiotroph
48+
METPO:1000705 axially filamented owl:Class motile axial filament
49+
METPO:1000804 Substrate-level phosphorylation owl:Class metabolism
50+
METPO:1000638 chemolithoheterotrophic owl:Class trophic type chemolithoheterotroph
51+
METPO:1000304 temperature optimum (growth range) owl:Class phenotype The specific temperature at which an organism exhibits maximum growth rate
52+
METPO:1000648 lithoheterotrophic owl:Class trophic type lithoheterotroph
53+
METPO:1000525 microbe owl:Class material entity An organism or virus or viron that is too small to be viewed by the unaided eye. OHMI:0000460 METPO is primarily concerned with unicellular, prokaryotic life forms, i.e. bacteria and archea, including the cases of giant bacteria like Thiomargarita https://biolink.github.io/biolink-model/OrganismTaxon
54+
METPO:1000872 non-spore forming owl:Class sporulation no no
55+
METPO:1000060 metabolism owl:Class biological process
56+
METPO:1000186 material entity owl:Class An object or portion of a substance or mixture of substances that consists of matter

0 commit comments

Comments
 (0)