Initial in-sheet MetaTraits resolver and predicate expansions #67

	name: Python Code Quality

	on:
	push:
	branches: [ main ]
	pull_request:
	branches: [ main ]
	workflow_dispatch:

	jobs:
	quality-checks:
	runs-on: ubuntu-latest
	strategy:
	matrix:
	python-version: ["3.11", "3.12"]

	steps:
	- uses: actions/checkout@v4

	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}

	- name: Install uv
	run: \|
	curl -LsSf https://astral.sh/uv/install.sh \| sh
	echo "$HOME/.local/bin" >> $GITHUB_PATH

	- name: Install dependencies
	run: \|
	uv sync --all-extras

	- name: Run ruff linter
	run: \|
	uv run ruff check . --output-format=github

	- name: Run ruff formatter check
	run: \|
	uv run ruff format --check .

	- name: Run mypy type checker
	run: \|
	uv run mypy metpo/ --ignore-missing-imports --no-strict-optional
	continue-on-error: true # Don't fail build on type errors initially

	- name: Check imports with ruff
	run: \|
	uv run ruff check . --select I --diff

	cli-smoke-tests:
	runs-on: ubuntu-latest
	needs: quality-checks

	steps:
	- uses: actions/checkout@v4

	- name: Set up Python
	uses: actions/setup-python@v5
	with:
	python-version: "3.11"

	- name: Install uv
	run: \|
	curl -LsSf https://astral.sh/uv/install.sh \| sh
	echo "$HOME/.local/bin" >> $GITHUB_PATH

	- name: Install dependencies
	run: \|
	uv sync

	- name: Test CLI tools are importable
	run: \|
	# Test that all CLI commands can be imported
	uv run extract-rank-triples --help
	uv run convert-chem-props --help
	uv run reconcile-bactotraits-coverage --help
	uv run reconcile-madin-coverage --help
	uv run categorize-ontologies --help

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