DESCRIPTION

Package: genefu
Type: Package
Title: Computation of Gene Expression-Based Signatures in Breast Cancer
Version: 2.39.1
Date: 2021-11-27
Authors@R: c(
  person('Deena M.A. Gendoo', role='aut'), 
  person('Natchar Ratanasirigulchai', role='aut'), 
  person('Markus S. Schroeder', role='aut'), 
  person('Laia Pare', role='aut'), 
  person('Joel S Parker', role='aut'), 
  person('Aleix Prat', role='aut'),
  person('Nikta Feizi', role='ctb'),
  person('Christopher Eeles', role='ctb'),
  person('Jermiah Joseph', role='ctb'),
  person('Benjamin Haibe-Kains', email='benjamin.haibe.kains@utoronto.ca',
    role=c('aut', 'cre')))
Description: This package contains functions implementing various tasks usually 
  required by gene expression analysis, especially in breast cancer studies: 
  gene mapping between different microarray platforms, identification of 
  molecular subtypes, implementation of published gene signatures, gene 
  selection, and survival analysis.
biocViews: DifferentialExpression, GeneExpression, Visualization, Clustering, 
  Classification
Depends: R (>= 4.1), survcomp, biomaRt, iC10, AIMS
Suggests: GeneMeta, breastCancerVDX, breastCancerMAINZ, breastCancerTRANSBIG, 
  breastCancerUPP, breastCancerUNT, breastCancerNKI, rmeta, Biobase, xtable, 
  knitr, caret, survival, BiocStyle, magick, rmarkdown
Imports: amap, impute, mclust, limma, graphics, stats, utils, iC10TrainingData
VignetteBuilder: knitr
License: Artistic-2.0
Encoding: UTF-8
URL: http://www.pmgenomics.ca/bhklab/software/genefu
RoxygenNote: 7.3.2