Update README.md

Author: Shotgunosine

README.md

@@ -13,7 +13,7 @@ afni_proc.py -subj_id {subj_id} \
 -dsets {epi_paths} -align_opts_aea -cost lpc+ZZ -giant_move \
 -tlrc_base MNI152_T1_2009c+tlrc -tlrc_NL_warp \
 -volreg_align_to MIN_OUTLIER \
--volreg_align_e2a -volreg_tlrc_warp -blur_size 4.0 -bash"""
+-volreg_align_e2a -volreg_tlrc_warp -blur_size 4.0 -bash
 ```
 
 ### Documentation
@@ -64,14 +64,7 @@ This App has the following command line arguments:
                                 is added automatically so don't add it to the command. The first
                                 _T1w for each subject will currently be used as the
                                 anat.All of the _bold will be used as the
-                                functionals.Example:-subj_id {subj_id}
-                                -scr_overwrite -out_dir {out_dir} -blocks
-                                tshift align tlrc volreg blur mask scale -copy_anat
-                                {anat_path} -tcat_remove_first_trs 0 -dsets
-                                {epi_paths} -align_opts_aea -cost lpc+ZZ -giant_move
-                                -tlrc_base MNI152_T1_2009c+tlrc -tlrc_NL_warp 
-                                -volreg_align_to MIN_OUTLIER 
-                                -volreg_align_e2a -volreg_tlrc_warp -blur_size 4.0 -bash"""
+                                functionals.Example:--afni_proc="-subj_id {subj_id} -scr_overwrite -out_dir {out_dir} -blocks tshift align tlrc volreg blur mask scale -copy_anat {anat_path} -tcat_remove_first_trs 0 -dsets {epi_paths} -align_opts_aea -cost lpc+ZZ -giant_move -tlrc_base MNI152_T1_2009c+tlrc -tlrc_NL_warp -volreg_align_to MIN_OUTLIER -volreg_align_e2a -volreg_tlrc_warp -blur_size 4.0 -bash"
 
 
 To run it in participant level mode (for one participant):