diff --git a/microephys_ecephys_bep032/README.md b/microephys_ecephys_bep032/README.md new file mode 100644 index 000000000..63981fa5e --- /dev/null +++ b/microephys_ecephys_bep032/README.md @@ -0,0 +1,5 @@ +# Massively parallel multi-electrode recordings of macaque motor cortex during an instructed delayed reach-to-grasp task + +## Summary +We provide two electrophysiological datasets recorded via a 10-by-10 multi-electrode array chronically implanted in the motor cortex of two macaque monkeys during an instructed delayed reach-to-grasp task ([Brochier et al., 2018](http://doi.org/10.1038/sdata.2018.55)). The datasets contain the continuous measure of extracellular potentials at each electrode sampled at 30 kHz, the local field potentials sampled at 1 kHz and the timing of the online and offline extracted spike times. It also includes the timing of several task-related and behavioral events recorded along with the electrophysiological data. Finally, the datasets provide a complete set of metadata structured in a standardized format. These metadata allow easy access to detailed information about the datasets such as the settings of the recording hardware, the array specifications, the location of the implant in the motor cortex, information about the monkeys, or the offline spike sorting. +The two datasets can be exploited to address crucial issues in neurophysiology such as: What are the principles of neural interactions in a local cortical network and how are these interactions modulated during a well-described behavioral task? How different neuronal signals such as single-unit activity, multi-unit activity or LFPs relate to each other? Which spike sorting methods provide the best estimate of single unit activity? \ No newline at end of file diff --git a/microephys_ecephys_bep032/dataset_description.json b/microephys_ecephys_bep032/dataset_description.json new file mode 100644 index 000000000..7c476083c --- /dev/null +++ b/microephys_ecephys_bep032/dataset_description.json @@ -0,0 +1,31 @@ +{ + "Name": "multielectrode_grasp", + "BIDSVersion": "1.10.0", + "License": "CC-BY-4.0", + "DatasetType": "raw", + "Authors": [ + "Thomas Brochier", + "Lyuba Zehl", + "Yaoyao Hao", + "Margaux Duret", + "Julia Sprenger", + "Michael Denker", + "Sonja Grün", + "Alexa Riehle" + ], + "Acknowledgements": "We thank Emiliano Torre and Vahid Rostami for detecting and handling the hyper-synchronous event artifacts, and Florent Jaillet for developing the Event-Detection Toolbox in Matlab. Special thanks to Moshe Abeles who was a tough teacher for Sonja Grün and taught her the knowledge required for projects like this.", + "HowToAcknowledge": "Brochier T, Zehl L, Hao Y, Duret M, Sprenger J, Denker M, Grün S, Riehle A (2017) Massively parallel multi-electrode recordings of macaque motor cortex during an instructed delayed reach-to-grasp task. G-Node. https://doi.org/10.12751/g-node.f83565", + "Funding": [ + "Helmholtz Portfolio “Supercomputing and Modeling for the Human Brain” (SMHB)", + "EU Grants 604102 and 720270 (Human Brain Project, HBP)", + "Priority Program SPP 1665 of the DFG (GR 1753/4-2 and DE 2175/2-1)", + "Collaborative Research Agreement RIKEN-CNRS", + "ANR GRASP", + "CNRS (PEPS, Neuro_IC2010)", + "DAAD", + "LIA Vision for Action" + ], + "ReferencesAndLinks": [ + "https://doi.org/10.1038/sdata.2018.55" + ] +} diff --git a/microephys_ecephys_bep032/participants.json b/microephys_ecephys_bep032/participants.json new file mode 100644 index 000000000..15a0e8274 --- /dev/null +++ b/microephys_ecephys_bep032/participants.json @@ -0,0 +1,29 @@ +{ + "participant_id": { + "Description": "Short identifier for monkey (e.g., used in file names)" + }, + "species": { + "Description": "binomial species name (genus, species with genus)" + }, + "sex": { + "Description": "Sex of the animal (male/female)" + }, + "birthdate": { + "Description": "Date of birth" + }, + "handedness": { + "Description": "Trained hand (left and/or right)" + }, + "surgerydate": { + "Description": "Date of the surgery" + }, + "disabilities": { + "Description": "Comment on existing disabilities" + }, + "character": { + "Description": "Comment on the general character/personality" + }, + "given_name": { + "Description": "Given Name" + } +} \ No newline at end of file diff --git a/microephys_ecephys_bep032/participants.tsv b/microephys_ecephys_bep032/participants.tsv new file mode 100644 index 000000000..bd647ce86 --- /dev/null +++ b/microephys_ecephys_bep032/participants.tsv @@ -0,0 +1,3 @@ +participant_id species sex birthdate handedness surgerydate disabilities character given_name +sub-i macaca mulatta male 2008-05-17T00:00:00 left 2014-05-22T00:00:00 n/a calm, but overall not really motivated. Less attentive. monkey_N +sub-l macaca mulatta female 2004-03-19T00:00:00 left 2010-09-15T00:00:00 Middle phalanx of right thumb is missing. Eager to work, quick and efficient but very nervous. Does not like to be touched (for instance for RF testing). monkey_L diff --git a/microephys_ecephys_bep032/sub-i/ses-140703/ecephys/sub-i_ses-140703_task-r2g_run-001_channels.json b/microephys_ecephys_bep032/sub-i/ses-140703/ecephys/sub-i_ses-140703_task-r2g_run-001_channels.json new file mode 100644 index 000000000..bc9092b49 --- /dev/null +++ b/microephys_ecephys_bep032/sub-i/ses-140703/ecephys/sub-i_ses-140703_task-r2g_run-001_channels.json @@ -0,0 +1,97 @@ +{ + "channel_id": { + "description": "Identifier for the channel. Corresponds to the channel number in the source data file." + }, + "contact_id": { + "description": "Identifier for the contact. 'n/a' indicates not applicable or not specified." + }, + "sampling_frequency": { + "description": "Sampling frequency of the channel in Hz." + }, + "units": { + "description": "Units of the recorded signal.", + "levels": { + "uV": "Microvolts" + } + }, + "channel_name": { + "description": "Descriptive name of the channel." + }, + "file_origin": { + "description": "Path to the source data file from which this channel's data originates." + }, + "connector_id": { + "description": "Identifier for the connector used for this channel." + }, + "connector_pin_id": { + "description": "Identifier for the pin on the connector used for this channel." + }, + "nev_dig_factor": { + "description": "Digital conversion factor for Neuralynx (NEV) data." + }, + "nb_sorted_units": { + "description": "Number of sorted units for this channel. 0 indicates no sorted units." + }, + "nsx": { + "description": "Neuralynx NSx file version or type. E.g., 2 for NS2, 5 for NS5." + }, + "hi_pass_freq": { + "description": "High-pass filter frequency in Hz. 'n/a' indicates no high-pass filter applied or not specified." + }, + "lo_pass_freq": { + "description": "Low-pass filter frequency in Hz. 'n/a' indicates no low-pass filter applied or not specified." + }, + "hi_pass_order": { + "description": "Order of the high-pass filter. 'n/a' indicates no high-pass filter applied or not specified." + }, + "lo_pass_order": { + "description": "Order of the low-pass filter. 'n/a' indicates no low-pass filter applied or not specified." + }, + "filter_type": { + "description": "Type of filter applied. 'n/a' indicates no filter applied or not specified.", + "levels": { + "n/a": "No filter applied or not specified.", + "butterworth": "Butterworth filter" + } + }, + "electrode_reject_HFC": { + "description": "Boolean indicating if high-frequency common mode rejection was applied to the electrode.", + "levels": { + "TRUE": "High-frequency common mode rejection was applied.", + "FALSE": "High-frequency common mode rejection was not applied.", + "n/a": "Not applicable or not specified." + } + }, + "electrode_reject_LFC": { + "description": "Boolean indicating if low-frequency common mode rejection was applied to the electrode.", + "levels": { + "TRUE": "Low-frequency common mode rejection was applied.", + "FALSE": "Low-frequency common mode rejection was not applied.", + "n/a": "Not applicable or not specified." + } + }, + "electrode_reject_IFC": { + "description": "Boolean indicating if intermediate-frequency common mode rejection was applied to the electrode.", + "levels": { + "TRUE": "Intermediate-frequency common mode rejection was applied.", + "FALSE": "Intermediate-frequency common mode rejection was not applied.", + "n/a": "Not applicable or not specified." + } + }, + "connector_aligned_ids": { + "description": "Identifier for aligned connectors. 'n/a' indicates not applicable or not specified." + }, + "coordinates_x": { + "description": "X-coordinate of the channel/electrode position. 'n/a' indicates not applicable or not specified." + }, + "coordinates_y": { + "description": "Y-coordinate of the channel/electrode position. 'n/a' indicates not applicable or not specified." + }, + "channel_type": { + "description": "Type of channel.", + "levels": { + "BEH": "Behavioral channel", + "EXT": "External channel" + } + } +} diff --git a/microephys_ecephys_bep032/sub-i/ses-140703/ecephys/sub-i_ses-140703_task-r2g_run-001_channels.tsv b/microephys_ecephys_bep032/sub-i/ses-140703/ecephys/sub-i_ses-140703_task-r2g_run-001_channels.tsv new file mode 100644 index 000000000..4d7e85bdc --- /dev/null +++ b/microephys_ecephys_bep032/sub-i/ses-140703/ecephys/sub-i_ses-140703_task-r2g_run-001_channels.tsv @@ -0,0 +1,199 @@ +channel_id contact_id stream_id sampling_frequency units channel_name file_origin connector_id connector_pin_id nev_dig_factor nb_sorted_units nev_hi_freq_order nev_hi_freq_type nev_lo_freq_order nev_lo_freq_type nsx_hi_freq_order nsx_lo_freq_order nsx_hi_freq_type nsx_lo_freq_type nsx hi_pass_freq lo_pass_freq hi_pass_order lo_pass_order filter_type electrode_reject_HFC electrode_reject_LFC 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Butterworth 2 Butterworth 1 4 Butterworth Butterworth 6 0.3 7500 1 3 Butterworth FALSE FALSE FALSE 7 2.4 0 EXT +194 93 2 30000 uV chan93 ../../../sourcedata/i140703-001.ns6 3 29 250 2 2 Butterworth 2 Butterworth 1 4 Butterworth Butterworth 6 0.3 7500 1 3 Butterworth FALSE FALSE FALSE 8 2.8 0 EXT +195 94 2 30000 uV chan94 ../../../sourcedata/i140703-001.ns6 3 30 250 1 2 Butterworth 2 Butterworth 1 4 Butterworth Butterworth 6 0.3 7500 1 3 Butterworth FALSE FALSE FALSE 18 2.8 0.4 EXT +196 95 2 30000 uV chan95 ../../../sourcedata/i140703-001.ns6 3 31 250 2 2 Butterworth 2 Butterworth 1 4 Butterworth Butterworth 6 0.3 7500 1 3 Butterworth FALSE FALSE FALSE 20 3.6 0.4 EXT +197 96 2 30000 uV chan96 ../../../sourcedata/i140703-001.ns6 3 32 250 1 2 Butterworth 2 Butterworth 1 4 Butterworth Butterworth 6 0.3 7500 1 3 Butterworth FALSE FALSE FALSE 9 3.2 0 EXT diff --git a/microephys_ecephys_bep032/sub-i/ses-140703/ecephys/sub-i_ses-140703_task-r2g_run-001_ecephys.json b/microephys_ecephys_bep032/sub-i/ses-140703/ecephys/sub-i_ses-140703_task-r2g_run-001_ecephys.json new file mode 100644 index 000000000..3019b23b3 --- /dev/null +++ b/microephys_ecephys_bep032/sub-i/ses-140703/ecephys/sub-i_ses-140703_task-r2g_run-001_ecephys.json @@ -0,0 +1,108 @@ +{ + "InstitutionName": "Institut de Neuroscience de la Timone, Marseille, France", + "InstitutionAddress": "Faculté de Médecine, 27, boulevard Jean Moulin, 13005 Marseille, France", + "Collaborators": [ + "Institute of Neuroscience and Medicine (INM-6), 52425 Jülich, Germany", + "Institute for Advanced Simulation (IAS-6), 52425 Jülich, Germany", + "JARA Institute Brain Structure-Function Relationships (INM-10), 52425 Jülich, Germany" + ], +"TaskName": "r2g", +"TaskDescription": "Reach to grasp: A task that involves the reaching of an object and holding it for a specific time", +"TaskType": "Two Cue Task", +"PowerLineFrequency": 60.0, +"Manufacturer": "NI, National Instruments Corporation, Austin, Texas, USA", +"Location": "Inst. de Neurosciences de la Timone (INT), UMR 7289, CNRS - Aix Marseille Univ., Marseille, France", +"SamplingFrequency": 30000.0, +"SerialNumber": "8596-001139", +"Creator": "Thomas Brochier", +"Maintainer": "Thomas Brochier", +"SoftwareFilters": "butterwoth", +"PowerLineFrequencyUnit": "Hz", +"ChannelId": { + "Description": "Unique identifier of the channel" +}, +"ContactId": { + "Description": "Unique identifier of the contact" +}, +"Units": { + "Description": "Units of the recording signal" +}, +"ChannelName": { + "Description": "Custom name of the recording channel" +}, +"FileOrigin": { + "Description": "Source file of the signal" +}, +"ConnectorId": { + "Description": "Id of the connector used for recording the signal" +}, +"ConnectorPinId": { + "Description": "Pin used for recording the signal" +}, +"NevDigFactor": { + "Description": "Digitization factor of the nev file" +}, +"NbSortedUnits": { + "Description": "Number of sorted units on this channel" +}, +"NevHiFreqOrder": { + "Description": "High pass order of the frequency filter" +}, +"NevHiFreqType": { + "Description": "Type of the high pass frequency filter" +}, +"NevLoFreqOrder": { + "Description": "Low pass order of the frequency filter" +}, +"NevLoFreqType": { + "Description": "Type of the high pass frequency filter" +}, +"NsxHiFreqOrder": { + "Description": "Order of the high pass frequency filter" +}, +"NsxLoFreqOrder": { + "Description": "Order of the low pass frequency filter" +}, +"NsxHiFreqType": { + "Description": "Type of the high pass frequency filter" +}, +"NsxLoFreqType": { + "Description": "Type of the low pass frequency filter" +}, +"Nsx": { + "Description": "NsX value used for storing of the signal" +}, +"HiPassFreq": { + "Description": "Cutoff frequency of the high pass filter" +}, +"LoPassFreq": { + "Description": "Cutoff frequency of the low pass filter" +}, +"HiPassOrder": { + "Description": "Order of the high pass filter" +}, +"LoPassOrder": { + "Description": "Order of the low pass filter" +}, +"FilterType": { + "Description": "Type of filter used" +}, +"ElectrodeRejectLfc": { + "Description": "Rejection of the signal in low frequency components (TRUE/FALSE)" +}, +"ElectrodeRejectIfc": { + "Description": "Rejection of the signal in intermediate frequency components (TRUE/FALSE)" +}, +"ElectrodeRejectHfc": { + "Description": "Rejection of the signal in high frequency components (TRUE/FALSE)" +}, +"ConnectorAlignedId": { + "Description": "channelId in a spatially organized grid" +}, +"CoordinatesX": { + "Description": "X-coordinate of the channel" +}, +"CoordinatesY": { + "Description": "Y-coordinate of the channel" +} +} diff --git a/ephys_BEP032/sub-20220101A/ephys/sub-20220101A_ephys.nwb b/microephys_ecephys_bep032/sub-i/ses-140703/ecephys/sub-i_ses-140703_task-r2g_run-001_ecephys.nix similarity index 100% rename from ephys_BEP032/sub-20220101A/ephys/sub-20220101A_ephys.nwb rename to microephys_ecephys_bep032/sub-i/ses-140703/ecephys/sub-i_ses-140703_task-r2g_run-001_ecephys.nix diff --git a/microephys_ecephys_bep032/sub-i/ses-140703/ecephys/sub-i_ses-140703_task-r2g_run-001_electrodes.json b/microephys_ecephys_bep032/sub-i/ses-140703/ecephys/sub-i_ses-140703_task-r2g_run-001_electrodes.json new file mode 100644 index 000000000..40caa1a2b --- /dev/null +++ b/microephys_ecephys_bep032/sub-i/ses-140703/ecephys/sub-i_ses-140703_task-r2g_run-001_electrodes.json @@ -0,0 +1,57 @@ +{ + "electrode_id": { + "description": "Identifier for the electrode. Corresponds to the electrode number on the probe." + }, + "probe_id": { + "description": "Identifier for the probe to which the electrode belongs.", + "levels": { + "Prob-1025-0503": "Probe model 1025-0503" + } + }, + "x": { + "description": "X-coordinate of the electrode position in millimeters, relative to a defined origin (e.g., probe tip or a common anatomical landmark)." + }, + "y": { + "description": "Y-coordinate of the electrode position in millimeters, relative to a defined origin (e.g., probe tip or a common anatomical landmark)." + }, + "z": { + "description": "Z-coordinate of the electrode position in millimeters, relative to a defined origin (e.g., probe tip or a common anatomical landmark)." + }, + "impedance": { + "description": "Measured impedance of the electrode." + }, + "material": { + "description": "Material of the electrode contact.", + "levels": { + "iridium oxide": "Iridium oxide" + } + }, + "location": { + "description": "Anatomical location of the electrode, often referring to a specific brain area.", + "levels": { + "M1": "Primary Motor Cortex" + } + }, + "hemisphere": { + "description": "Hemisphere in which the electrode is located.", + "levels": { + "right": "Right hemisphere", + "left": "Left hemisphere" + } + }, + "connector_aligned_id": { + "description": "Identifier for the aligned connector pin associated with this electrode." + }, + "impedance_unit": { + "description": "Unit of impedance measurement.", + "levels": { + "kOhm": "Kiloohm" + } + }, + "insulation": { + "description": "Type of insulation material used for the electrode.", + "levels": { + "Parylene-c": "Parylene-c" + } + } +} diff --git a/microephys_ecephys_bep032/sub-i/ses-140703/ecephys/sub-i_ses-140703_task-r2g_run-001_electrodes.tsv b/microephys_ecephys_bep032/sub-i/ses-140703/ecephys/sub-i_ses-140703_task-r2g_run-001_electrodes.tsv new file mode 100644 index 000000000..bc0066e40 --- /dev/null +++ b/microephys_ecephys_bep032/sub-i/ses-140703/ecephys/sub-i_ses-140703_task-r2g_run-001_electrodes.tsv @@ -0,0 +1,97 @@ +electrode_id probe_id x y z impedance material location hemisphere connector_aligned_id impedance_unit insulation +1 Prob-8596-001139 3.6 0.8 1.5 73 iridium oxide M1 right 93 kOhm Parylene-c +2 Prob-8596-001139 3.6 0.4 1.5 92 iridium oxide M1 right 92 kOhm Parylene-c +3 Prob-8596-001139 3.6 1.2 1.5 68 iridium oxide M1 right 94 kOhm Parylene-c +4 Prob-8596-001139 3.6 1.6 1.5 67 iridium oxide M1 right 95 kOhm Parylene-c +5 Prob-8596-001139 2.8 1.6 1.5 48 iridium oxide M1 right 75 kOhm Parylene-c +6 Prob-8596-001139 3.6 2.0 1.5 57 iridium oxide M1 right 96 kOhm Parylene-c +7 Prob-8596-001139 3.2 1.6 1.5 51 iridium oxide M1 right 85 kOhm Parylene-c +8 Prob-8596-001139 3.6 2.4 1.5 61 iridium oxide M1 right 97 kOhm Parylene-c +9 Prob-8596-001139 3.2 2.0 1.5 72 iridium oxide M1 right 86 kOhm Parylene-c +10 Prob-8596-001139 3.6 2.8 1.5 57 iridium oxide M1 right 98 kOhm Parylene-c +11 Prob-8596-001139 3.2 2.4 1.5 46 iridium oxide M1 right 87 kOhm Parylene-c +12 Prob-8596-001139 3.2 2.8 1.5 41 iridium oxide M1 right 88 kOhm Parylene-c +13 Prob-8596-001139 2.8 2.4 1.5 69 iridium oxide M1 right 77 kOhm Parylene-c +14 Prob-8596-001139 3.6 3.2 1.5 44 iridium oxide M1 right 99 kOhm Parylene-c +15 Prob-8596-001139 2.4 2.0 1.5 51 iridium oxide M1 right 66 kOhm Parylene-c +16 Prob-8596-001139 3.2 3.2 1.5 46 iridium oxide M1 right 89 kOhm Parylene-c +17 Prob-8596-001139 2.8 2.0 1.5 61 iridium oxide M1 right 76 kOhm Parylene-c +18 Prob-8596-001139 3.2 3.6 1.5 47 iridium oxide M1 right 90 kOhm Parylene-c +19 Prob-8596-001139 2.4 2.4 1.5 47 iridium oxide M1 right 67 kOhm Parylene-c +20 Prob-8596-001139 2.8 3.2 1.5 44 iridium oxide M1 right 79 kOhm Parylene-c +21 Prob-8596-001139 2.0 2.8 1.5 42 iridium oxide M1 right 58 kOhm Parylene-c +22 Prob-8596-001139 2.8 3.6 1.5 43 iridium oxide M1 right 80 kOhm Parylene-c +23 Prob-8596-001139 2.8 2.8 1.5 41 iridium oxide M1 right 78 kOhm Parylene-c +24 Prob-8596-001139 2.4 3.6 1.5 48 iridium oxide M1 right 70 kOhm Parylene-c +25 Prob-8596-001139 2.4 2.8 1.5 48 iridium oxide M1 right 68 kOhm Parylene-c +26 Prob-8596-001139 2.0 3.6 1.5 45 iridium oxide M1 right 60 kOhm Parylene-c +27 Prob-8596-001139 2.4 3.2 1.5 46 iridium oxide M1 right 69 kOhm Parylene-c +28 Prob-8596-001139 1.6 3.6 1.5 44 iridium oxide M1 right 50 kOhm Parylene-c +29 Prob-8596-001139 2.0 3.2 1.5 46 iridium oxide M1 right 59 kOhm Parylene-c +30 Prob-8596-001139 1.2 3.6 1.5 45 iridium oxide M1 right 40 kOhm Parylene-c +31 Prob-8596-001139 1.6 3.2 1.5 52 iridium oxide M1 right 49 kOhm Parylene-c +32 Prob-8596-001139 0.8 3.6 1.5 51 iridium oxide M1 right 30 kOhm Parylene-c +33 Prob-8596-001139 3.2 0.8 1.5 52 iridium oxide M1 right 83 kOhm Parylene-c +34 Prob-8596-001139 3.2 1.2 1.5 69 iridium oxide M1 right 84 kOhm Parylene-c +35 Prob-8596-001139 2.8 0.8 1.5 60 iridium oxide M1 right 73 kOhm Parylene-c +36 Prob-8596-001139 2.8 1.2 1.5 76 iridium oxide M1 right 74 kOhm Parylene-c +37 Prob-8596-001139 2.4 0.8 1.5 48 iridium oxide M1 right 63 kOhm Parylene-c +38 Prob-8596-001139 2.4 1.2 1.5 58 iridium oxide M1 right 64 kOhm Parylene-c +39 Prob-8596-001139 2.0 0.8 1.5 47 iridium oxide M1 right 53 kOhm Parylene-c +40 Prob-8596-001139 2.0 1.2 1.5 54 iridium oxide M1 right 54 kOhm Parylene-c +41 Prob-8596-001139 1.6 0.8 1.5 47 iridium oxide M1 right 43 kOhm Parylene-c +42 Prob-8596-001139 2.0 1.6 1.5 57 iridium oxide M1 right 55 kOhm Parylene-c +43 Prob-8596-001139 1.6 1.2 1.5 56 iridium oxide M1 right 44 kOhm Parylene-c +44 Prob-8596-001139 1.6 1.6 1.5 57 iridium oxide M1 right 45 kOhm Parylene-c +45 Prob-8596-001139 1.2 0.8 1.5 53 iridium oxide M1 right 33 kOhm Parylene-c +46 Prob-8596-001139 1.6 2.0 1.5 53 iridium oxide M1 right 46 kOhm Parylene-c +47 Prob-8596-001139 1.2 1.2 1.5 49 iridium oxide M1 right 34 kOhm Parylene-c +48 Prob-8596-001139 2.4 1.6 1.5 47 iridium oxide M1 right 65 kOhm Parylene-c +49 Prob-8596-001139 0.8 1.2 1.5 67 iridium oxide M1 right 24 kOhm Parylene-c +50 Prob-8596-001139 2.0 2.0 1.5 57 iridium oxide M1 right 56 kOhm Parylene-c +51 Prob-8596-001139 1.2 1.6 1.5 51 iridium oxide M1 right 35 kOhm Parylene-c +52 Prob-8596-001139 1.6 2.4 1.5 50 iridium oxide M1 right 47 kOhm Parylene-c +53 Prob-8596-001139 0.8 1.6 1.5 57 iridium oxide M1 right 25 kOhm Parylene-c +54 Prob-8596-001139 2.0 2.4 1.5 52 iridium oxide M1 right 57 kOhm Parylene-c +55 Prob-8596-001139 0.8 2.0 1.5 45 iridium oxide M1 right 26 kOhm Parylene-c +56 Prob-8596-001139 1.2 2.0 1.5 46 iridium oxide M1 right 36 kOhm Parylene-c +57 Prob-8596-001139 0.8 2.4 1.5 62 iridium oxide M1 right 27 kOhm Parylene-c +58 Prob-8596-001139 1.2 2.4 1.5 64 iridium oxide M1 right 37 kOhm Parylene-c +59 Prob-8596-001139 0.8 2.8 1.5 55 iridium oxide M1 right 28 kOhm Parylene-c +60 Prob-8596-001139 1.2 2.8 1.5 57 iridium oxide M1 right 38 kOhm Parylene-c +61 Prob-8596-001139 0.8 3.2 1.5 49 iridium oxide M1 right 29 kOhm Parylene-c +62 Prob-8596-001139 1.6 2.8 1.5 57 iridium oxide M1 right 48 kOhm Parylene-c +63 Prob-8596-001139 0.4 3.2 1.5 60 iridium oxide M1 right 19 kOhm Parylene-c +64 Prob-8596-001139 1.2 3.2 1.5 62 iridium oxide M1 right 39 kOhm Parylene-c +65 Prob-8596-001139 3.2 0.0 1.5 58 iridium oxide M1 right 81 kOhm Parylene-c +66 Prob-8596-001139 3.2 0.4 1.5 49 iridium oxide M1 right 82 kOhm Parylene-c +67 Prob-8596-001139 2.8 0.0 1.5 58 iridium oxide M1 right 71 kOhm Parylene-c +68 Prob-8596-001139 2.8 0.4 1.5 71 iridium oxide M1 right 72 kOhm Parylene-c +69 Prob-8596-001139 2.4 0.0 1.5 64 iridium oxide M1 right 61 kOhm Parylene-c +70 Prob-8596-001139 2.4 0.4 1.5 57 iridium oxide M1 right 62 kOhm Parylene-c +71 Prob-8596-001139 2.0 0.0 1.5 59 iridium oxide M1 right 51 kOhm Parylene-c +72 Prob-8596-001139 2.0 0.4 1.5 55 iridium oxide M1 right 52 kOhm Parylene-c +73 Prob-8596-001139 1.6 0.0 1.5 50 iridium oxide M1 right 41 kOhm Parylene-c +74 Prob-8596-001139 1.6 0.4 1.5 60 iridium oxide M1 right 42 kOhm Parylene-c +75 Prob-8596-001139 1.2 0.0 1.5 61 iridium oxide M1 right 31 kOhm Parylene-c +76 Prob-8596-001139 1.2 0.4 1.5 56 iridium oxide M1 right 32 kOhm Parylene-c +77 Prob-8596-001139 0.8 0.0 1.5 50 iridium oxide M1 right 21 kOhm Parylene-c +78 Prob-8596-001139 0.8 0.4 1.5 65 iridium oxide M1 right 22 kOhm Parylene-c +79 Prob-8596-001139 0.4 0.0 1.5 49 iridium oxide M1 right 11 kOhm Parylene-c +80 Prob-8596-001139 0.4 0.4 1.5 59 iridium oxide M1 right 12 kOhm Parylene-c +81 Prob-8596-001139 0.0 0.4 1.5 62 iridium oxide M1 right 2 kOhm Parylene-c +82 Prob-8596-001139 0.8 0.8 1.5 53 iridium oxide M1 right 23 kOhm Parylene-c +83 Prob-8596-001139 0.0 0.8 1.5 49 iridium oxide M1 right 3 kOhm Parylene-c +84 Prob-8596-001139 0.4 0.8 1.5 58 iridium oxide M1 right 13 kOhm Parylene-c +85 Prob-8596-001139 0.0 1.2 1.5 49 iridium oxide M1 right 4 kOhm Parylene-c +86 Prob-8596-001139 0.4 1.2 1.5 92 iridium oxide M1 right 14 kOhm Parylene-c +87 Prob-8596-001139 0.4 1.6 1.5 56 iridium oxide M1 right 15 kOhm Parylene-c +88 Prob-8596-001139 0.0 1.6 1.5 73 iridium oxide M1 right 5 kOhm Parylene-c +89 Prob-8596-001139 0.4 2.0 1.5 56 iridium oxide M1 right 16 kOhm Parylene-c +90 Prob-8596-001139 0.0 2.0 1.5 48 iridium oxide M1 right 6 kOhm Parylene-c +91 Prob-8596-001139 0.4 2.4 1.5 56 iridium oxide M1 right 17 kOhm Parylene-c +92 Prob-8596-001139 0.0 2.4 1.5 47 iridium oxide M1 right 7 kOhm Parylene-c +93 Prob-8596-001139 0.0 2.8 1.5 56 iridium oxide M1 right 8 kOhm Parylene-c +94 Prob-8596-001139 0.4 2.8 1.5 49 iridium oxide M1 right 18 kOhm Parylene-c +95 Prob-8596-001139 0.4 3.6 1.5 51 iridium oxide M1 right 20 kOhm Parylene-c +96 Prob-8596-001139 0.0 3.2 1.5 55 iridium oxide M1 right 9 kOhm Parylene-c diff --git a/microephys_ecephys_bep032/sub-i/ses-140703/ecephys/sub-i_ses-140703_task-r2g_run-001_events.json b/microephys_ecephys_bep032/sub-i/ses-140703/ecephys/sub-i_ses-140703_task-r2g_run-001_events.json new file mode 100644 index 000000000..ba5722aff --- /dev/null +++ b/microephys_ecephys_bep032/sub-i/ses-140703/ecephys/sub-i_ses-140703_task-r2g_run-001_events.json @@ -0,0 +1,29 @@ +{ + "onset": { + "Description": "Onset of the trial, defined by the 'TS-ON' (Trial Start) event marker.", + "Units": "s" + }, + "duration": { + "Description": "Duration of the trial, calculated as the time difference between the 'STOP' (End of trial) and 'TS-ON' (Trial Start) event markers.", + "Units": "s" + }, + "trial_type": { + "Description": "Categorical type of the trial, indicating the grip and force requirements.", + "Levels": { + "SGLF": "Side Grip Low Force trial (Grip first cueing)", + "SGHF": "Side Grip High Force trial (Grip first cueing)", + "PGLF": "Precision Grip Low Force trial (Grip first cueing)", + "PGHF": "Precision Grip High Force trial (Grip first cueing)", + "LFSG": "Low Force Side Grip trial (Force first cueing)", + "HFSG": "High Force Side Grip trial (Force first cueing)", + "LFPG": "Low Force Precision Grip trial (Force first cueing)", + "HFPG": "High Force Precision Grip trial (Force first cueing)", + "NONE": "No specific trial type (e.g., aborted or non-task related event)" + } + }, + "response_time": { + "Description": "Time of the subject's response, defined by the 'SR' (table switch released) event marker.", + "Units": "s", + "MissingValues": "n/a" + } +} \ No newline at end of file diff --git a/microephys_ecephys_bep032/sub-i/ses-140703/ecephys/sub-i_ses-140703_task-r2g_run-001_events.tsv b/microephys_ecephys_bep032/sub-i/ses-140703/ecephys/sub-i_ses-140703_task-r2g_run-001_events.tsv new file mode 100644 index 000000000..4f34a6339 --- /dev/null +++ b/microephys_ecephys_bep032/sub-i/ses-140703/ecephys/sub-i_ses-140703_task-r2g_run-001_events.tsv @@ -0,0 +1,445 @@ +onset duration trial_type response_time +1.3141333333333334 3.5164666666666666 SGHF 3.6255333333333334 +7.131433333333333 3.371 SGHF 9.2604 +12.8032 2.4493333333333333 PGHF +19.2123 3.5135333333333333 SGLF 21.524766666666667 +25.0267 3.4449 SGLF 27.207 +30.772633333333334 3.5614333333333333 PGHF 33.099366666666666 +36.7325 2.6149333333333334 PGLF +42.0626 3.4060666666666666 SGHF 44.802 +47.76943333333333 3.1717666666666667 PGLF 50.04496666666667 +53.81643333333333 3.4549 SGLF 56.096 +59.58316666666666 3.1491333333333333 SGLF 61.35263333333333 +65.38316666666666 2.887 SGLF 67.87183333333333 +71.3092 2.9169666666666666 PGLF 73.28816666666666 +77.0135 2.9090333333333333 SGHF 79.69933333333333 +82.7299 2.8436666666666667 PGLF 85.6696 +88.65156666666666 2.903833333333333 SGHF 91.4287 +94.5501 2.9079 PGLF 97.2478 +100.3204 2.9059 SGHF 103.00216666666667 +106.07923333333333 2.9069333333333334 PGLF 108.71546666666667 +111.8532 2.9069 SGHF 114.5219 +117.6253 2.9059 PGLF 120.3547 +123.3853 2.9079 SGHF 126.1558 +129.1558 2.9059 PGLF 131.9567 +135.0393 2.9059 SGHF 137.9567 +140.7993 2.9069 PGLF 143.6089 +146.7793 2.9069 SGHF 149.6108 +152.67709999999998 2.9069 SGLF 155.27746666666666 +158.62179999999998 2.9079 PGLF 161.4156 +164.42639999999998 2.9069 SGLF 167.34343333333334 +170.1359 2.9059 PGHF 172.9367 +175.9084 2.9069 SGLF 178.6385 +181.71393333333333 2.9079 PGLF 184.40893333333334 +187.4925 2.9069 SGLF 190.3556 +193.3853 2.9079 PGHF 196.225 +199.1558 2.9059 SGLF 201.9567 +204.9325 2.9079 PGHF 207.76786666666667 +210.74926666666667 2.9059 SGLF 213.6528 +216.5125 2.9079 SGHF 219.48376666666666 +222.28341666666666 2.9069 SGLF 225.1415 +228.01639999999998 2.9079 PGHF 230.81736666666667 +233.7468 2.9059 PGLF 236.643 +239.5289 2.9079 SGLF 242.3486 +245.3306 2.9069 SGHF 248.2638 +251.3486 2.9079 PGLF 254.1543 +257.0488 2.9059 SGLF 259.9556 +263.0336 2.9079 PGLF 265.8895 +268.86386666666665 2.9059 SGHF 271.714 +274.6591333333333 2.9069 PGLF 277.4925 +280.606 2.9059 PGHF 283.4557 +286.3868 2.9079 PGHF 289.1173 +292.0535 2.9069 SGLF 294.9242 +297.8785 2.9079 PGHF 300.7553 +303.6591 2.9059 SGLF 306.525 +309.4395 2.9079 PGLF 312.3126 +315.2289 2.9069 SGLF 318.1063 +321.0423 2.9079 PGLF 323.8687 +326.8504 2.9059 SGLF 329.7556 +332.6591 2.9079 PGHF 335.5573 +338.4888 2.9059 PGLF 341.3866 +344.2925 2.9079 SGHF 347.1994 +350.1189 2.9059 PGLF 352.946 +355.9015 2.9079 PGHF 358.8066 +361.7139 2.9059 PGHF 364.5711 +367.5028 2.9079 SGLF 370.3659 +373.2834 2.9059 PGHF 376.1999 +379.0888 2.9079 SGLF 381.8895 +384.8206 2.9059 PGHF 387.6534 +390.606 2.9079 SGLF 393.4395 +396.3853 2.9059 PGHF 399.2556 +402.163 2.9079 SGLF 405.0347 +407.95 2.9059 SGHF 410.8206 +413.7543 2.9079 PGLF 416.5873 +419.5288 2.9059 PGHF 422.3486 +425.3306 2.9079 SGLF 428.163 +431.1449 2.9059 SGHF 433.9793 +436.9325 2.9079 PGLF 439.7556 +442.7299 2.9059 PGHF 445.5573 +448.4888 2.9079 SGLF 451.3556 +454.2925 2.9059 SGHF 457.1994 +460.0888 2.9079 PGHF 462.9173 +465.8951 2.9059 SGLF 468.7556 +471.6591 2.9079 PGHF 474.4837 +477.4325 2.9059 PGHF 480.2638 +483.2535 2.9079 SGLF 486.0888 +489.0462 2.9059 SGHF 491.8787 +494.8173 2.9079 PGHF 497.6506 +500.606 2.9059 SGLF 503.4395 +506.3556 2.9079 PGLF 509.1895 +512.1449 2.9059 SGHF 514.9793 +517.9325 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SGHF 2099.8494 +2102.7543 2.9079 PGLF 2105.5873 +2108.543 2.9059 PGHF 2111.3556 +2114.3297 2.9079 SGLF 2117.14 +2120.0888 2.9059 PGHF 2122.8951 +2125.8755 2.9079 SGLF 2128.7048 +2131.6591 2.9059 PGHF 2134.4837 +2137.4325 2.9079 SGLF 2140.2638 +2143.2289 2.9059 SGHF 2146.0347 +2149.0163999999999 2.9079 PGLF 2151.8494 +2154.7543 2.9059 PGHF 2157.5873 +2160.543 2.9079 SGLF 2163.376 +2166.3306 2.9059 SGHF 2169.1556 +2172.064 2.9079 PGLF 2174.8895 +2177.8494 2.9059 PGHF 2180.6506 +2183.6591 2.9079 SGLF 2186.4837 +2189.4325 2.9059 PGHF 2192.2556 +2195.2289 2.9079 SGLF 2198.0347 +2201.0163999999999 2.9059 SGHF 2203.8494 +2206.7543 2.9079 PGLF 2209.5873 +2212.5312 2.9059 PGHF 2215.3486 +2218.3182 2.9079 SGLF 2221.1556 +2224.0888 2.9059 SGHF 2226.9173 +2229.8755 2.9079 PGLF 2232.7048 +2235.6591 2.9059 PGHF 2238.4837 +2241.44 2.9079 SGLF 2244.2638 +2247.2289 2.9059 SGHF 2250.0347 +2253.0163999999999 2.9079 PGLF 2255.8206 +2258.7543 2.9059 PGHF 2261.5873 +2264.543 2.9079 SGLF 2267.3486 +2270.3306 2.9059 SGHF 2273.1556 +2276.0888 2.9079 PGLF 2278.9173 +2281.8755 2.9059 PGHF 2284.6837 +2287.6591 2.9079 SGLF 2290.4837 +2293.4325 2.9059 SGHF 2296.2638 +2299.2289 2.9079 PGLF 2302.0347 +2305.0163999999999 2.9059 PGHF 2307.8206 +2310.799 2.9079 SGLF 2313.6109 +2316.5875 2.9059 PGHF 2319.376 +2322.3486 2.9079 SGLF 2325.1556 +2328.0888 2.9059 PGHF 2330.8895 +2333.8895 2.9079 PGHF 2336.714 +2339.6591 2.9059 SGLF 2342.4837 +2345.4325 2.9079 SGHF 2348.2638 +2351.2289 2.9059 PGLF 2354.0347 +2357.0163999999999 2.9079 PGHF 2359.8494 +2362.7543 2.9059 SGLF 2365.5873 +2368.543 2.9079 PGHF 2371.3556 +2374.3297 2.9059 SGLF 2377.14 +2380.0888 2.9079 SGHF 2382.8951 +2385.8755 2.9059 PGLF 2388.714 +2391.6591 2.9079 PGHF 2394.4837 +2397.4325 2.9059 SGLF 2400.2638 +2403.2289 2.9079 SGHF 2406.0347 +2409.0163999999999 2.9059 PGLF 2411.8494 +2414.7543 2.9079 PGHF 2417.5873 +2420.543 2.9059 SGLF 2423.376 +2426.3306 2.9079 SGHF 2429.1556 +2432.064 2.9059 PGLF 2434.8895 +2438.025 2.9079 PGHF 2440.8206 +2443.7543 2.9059 SGLF 2446.5873 +2449.5289 2.9079 PGHF 2452.3486 +2455.3306 2.9059 SGLF 2458.1556 +2461.1189 2.9079 SGHF 2463.9556 +2466.8895 2.9059 PGLF 2469.714 +2472.6591 2.9079 PGHF 2475.4837 +2478.4325 2.9059 SGLF 2481.2638 +2484.2289 2.9079 SGHF 2487.0347 +2490.0163999999999 2.9059 PGLF 2492.8206 +2495.7543 2.9079 PGHF 2498.5873 +2501.543 2.9059 SGLF 2504.376 +2507.3306 2.9079 PGHF 2510.1556 +2513.064 2.9059 SGLF 2515.8787 +2518.8895 2.9079 SGHF 2521.714 +2524.6591 2.9059 PGLF 2527.4837 +2530.4325 2.9079 PGHF 2533.2556 +2536.2289 2.9059 SGLF 2539.0347 +2542.0163999999999 2.9079 PGHF 2544.8494 +2547.7543 2.9059 PGLF 2550.5873 +2553.543 2.9079 SGLF 2556.3556 +2559.3297 2.9059 PGHF 2562.14 +2565.0888 2.9079 SGLF 2567.9242 \ No newline at end of file diff --git a/microephys_ecephys_bep032/sub-i/ses-140703/ecephys/sub-i_ses-140703_task-r2g_run-001_probes.json b/microephys_ecephys_bep032/sub-i/ses-140703/ecephys/sub-i_ses-140703_task-r2g_run-001_probes.json new file mode 100644 index 000000000..4c4c2d129 --- /dev/null +++ b/microephys_ecephys_bep032/sub-i/ses-140703/ecephys/sub-i_ses-140703_task-r2g_run-001_probes.json @@ -0,0 +1,71 @@ +{ + "probe_id": { + "description": "Unique identifier for the probe." + }, + "type": { + "description": "Type of the probe." + }, + "location": { + "description": "Anatomical location where the probe was implanted, often referring to a specific brain area.", + "levels": { + "M1": "Primary Motor Cortex" + } + }, + "manufacturer": { + "description": "Manufacturer of the probe." + }, + "device_serial_number": { + "description": "Serial number of the specific probe device." + }, + "electrode_count": { + "description": "Total number of electrodes on the probe." + }, + "width": { + "description": "Width of the probe in specified units." + }, + "height": { + "description": "Height of the probe in specified units." + }, + "depth": { + "description": "Depth of the probe in specified units." + }, + "hemisphere": { + "description": "Hemisphere in which the probe was implanted.", + "levels": { + "right": "Right hemisphere" + } + }, + "placement_picture": { + "description": "URL to a picture illustrating the probe's placement." + }, + "dimension_units": { + "description": "Units for probe dimensions (width, height, depth).", + "levels": { + "mm": "Millimeters" + } + }, + "wires_material": { + "description": "Material of the probe's wires.", + "levels": { + "Pt/Au": "Platinum/Gold alloy" + } + }, + "wires_diameter": { + "description": "Diameter of the probe's wires." + }, + "wires_length": { + "description": "Length of the probe's wires." + }, + "wires_units": { + "description": "Units for wire dimensions (diameter, length).", + "levels": { + "m": "Meters" + } + }, + "owner": { + "description": "Institution or entity that owns the probe.", + "levels": { + "RIKEN-BSI, Japan": "RIKEN Brain Science Institute, Japan" + } + } +} diff --git a/microephys_ecephys_bep032/sub-i/ses-140703/ecephys/sub-i_ses-140703_task-r2g_run-001_probes.tsv b/microephys_ecephys_bep032/sub-i/ses-140703/ecephys/sub-i_ses-140703_task-r2g_run-001_probes.tsv new file mode 100644 index 000000000..0885f4bd2 --- /dev/null +++ b/microephys_ecephys_bep032/sub-i/ses-140703/ecephys/sub-i_ses-140703_task-r2g_run-001_probes.tsv @@ -0,0 +1,2 @@ +probe_id type location manufacturer device_serial_number electrode_count width height depth hemisphere placement_picture dimension_units wires_material wires_diameter wires_length wires_units owner +Prob-8596-001139 utah array M1 Blackrock Microsystems 8596-001139 100 4 4 1.5 right https://www.nature.com/articles/sdata201855/figures/1 mm Pt/Au 2.5e-05 0.04 m RIKEN-BSI, Japan diff --git a/microephys_ecephys_bep032/sub-i/sub-i_acq-photo1_photo.png b/microephys_ecephys_bep032/sub-i/sub-i_acq-photo1_photo.png new file mode 100644 index 000000000..f003a0e7f Binary files /dev/null and b/microephys_ecephys_bep032/sub-i/sub-i_acq-photo1_photo.png differ diff --git a/microephys_ecephys_bep032/sub-i/sub-i_sessions.json b/microephys_ecephys_bep032/sub-i/sub-i_sessions.json new file mode 100644 index 000000000..5af720110 --- /dev/null +++ b/microephys_ecephys_bep032/sub-i/sub-i_sessions.json @@ -0,0 +1,29 @@ +{ + "session_id": { + "Description": "Unique identifier of the session" + }, + "acq_time": { + "Description": "Time of the recording" + }, + "duration": { + "Description": "Duration of the recording" + }, + "session_quality": { + "Description": "General quality of the session (excellent/good/ok/bad)" + }, + "data_quality": { + "Description": "Quality of the recorded data (excellent/good/ok/bad)" + }, + "#_trials": { + "Description": "Number of trial within the session" + }, + "comment": { + "Description": "Comment by the experimenter" + }, + "weekday": { + "Description": "Day of the week the recording was performed (monday,tuesday,...)" + }, + "noisy": { + "Description": "Was noise observed in the data during the recording (yes/no)" + } +} \ No newline at end of file diff --git a/microephys_ecephys_bep032/sub-i/sub-i_sessions.tsv b/microephys_ecephys_bep032/sub-i/sub-i_sessions.tsv new file mode 100644 index 000000000..ce27928e3 --- /dev/null +++ b/microephys_ecephys_bep032/sub-i/sub-i_sessions.tsv @@ -0,0 +1,2 @@ +session_id acq_time duration session_quality data_quality #_trials comment weekday noisy +140703 2014-07-03T10:40:59 00:16:43.212 excellent good 161 thursday yes diff --git a/microephys_ecephys_bep032/sub-l/ses-101210/ecephys/sub-l_ses-101210_task-r2g_run-001_channels.json b/microephys_ecephys_bep032/sub-l/ses-101210/ecephys/sub-l_ses-101210_task-r2g_run-001_channels.json new file mode 100644 index 000000000..bc9092b49 --- /dev/null +++ b/microephys_ecephys_bep032/sub-l/ses-101210/ecephys/sub-l_ses-101210_task-r2g_run-001_channels.json @@ -0,0 +1,97 @@ +{ + "channel_id": { + "description": "Identifier for the channel. Corresponds to the channel number in the source data file." + }, + "contact_id": { + "description": "Identifier for the contact. 'n/a' indicates not applicable or not specified." + }, + "sampling_frequency": { + "description": "Sampling frequency of the channel in Hz." + }, + "units": { + "description": "Units of the recorded signal.", + "levels": { + "uV": "Microvolts" + } + }, + "channel_name": { + "description": "Descriptive name of the channel." + }, + "file_origin": { + "description": "Path to the source data file from which this channel's data originates." + }, + "connector_id": { + "description": "Identifier for the connector used for this channel." + }, + "connector_pin_id": { + "description": "Identifier for the pin on the connector used for this channel." + }, + "nev_dig_factor": { + "description": "Digital conversion factor for Neuralynx (NEV) data." + }, + "nb_sorted_units": { + "description": "Number of sorted units for this channel. 0 indicates no sorted units." + }, + "nsx": { + "description": "Neuralynx NSx file version or type. E.g., 2 for NS2, 5 for NS5." + }, + "hi_pass_freq": { + "description": "High-pass filter frequency in Hz. 'n/a' indicates no high-pass filter applied or not specified." + }, + "lo_pass_freq": { + "description": "Low-pass filter frequency in Hz. 'n/a' indicates no low-pass filter applied or not specified." + }, + "hi_pass_order": { + "description": "Order of the high-pass filter. 'n/a' indicates no high-pass filter applied or not specified." + }, + "lo_pass_order": { + "description": "Order of the low-pass filter. 'n/a' indicates no low-pass filter applied or not specified." + }, + "filter_type": { + "description": "Type of filter applied. 'n/a' indicates no filter applied or not specified.", + "levels": { + "n/a": "No filter applied or not specified.", + "butterworth": "Butterworth filter" + } + }, + "electrode_reject_HFC": { + "description": "Boolean indicating if high-frequency common mode rejection was applied to the electrode.", + "levels": { + "TRUE": "High-frequency common mode rejection was applied.", + "FALSE": "High-frequency common mode rejection was not applied.", + "n/a": "Not applicable or not specified." + } + }, + "electrode_reject_LFC": { + "description": "Boolean indicating if low-frequency common mode rejection was applied to the electrode.", + "levels": { + "TRUE": "Low-frequency common mode rejection was applied.", + "FALSE": "Low-frequency common mode rejection was not applied.", + "n/a": "Not applicable or not specified." + } + }, + "electrode_reject_IFC": { + "description": "Boolean indicating if intermediate-frequency common mode rejection was applied to the electrode.", + "levels": { + "TRUE": "Intermediate-frequency common mode rejection was applied.", + "FALSE": "Intermediate-frequency common mode rejection was not applied.", + "n/a": "Not applicable or not specified." + } + }, + "connector_aligned_ids": { + "description": "Identifier for aligned connectors. 'n/a' indicates not applicable or not specified." + }, + "coordinates_x": { + "description": "X-coordinate of the channel/electrode position. 'n/a' indicates not applicable or not specified." + }, + "coordinates_y": { + "description": "Y-coordinate of the channel/electrode position. 'n/a' indicates not applicable or not specified." + }, + "channel_type": { + "description": "Type of channel.", + "levels": { + "BEH": "Behavioral channel", + "EXT": "External channel" + } + } +} diff --git a/microephys_ecephys_bep032/sub-l/ses-101210/ecephys/sub-l_ses-101210_task-r2g_run-001_channels.tsv b/microephys_ecephys_bep032/sub-l/ses-101210/ecephys/sub-l_ses-101210_task-r2g_run-001_channels.tsv new file mode 100644 index 000000000..d8e3caf9a --- /dev/null +++ b/microephys_ecephys_bep032/sub-l/ses-101210/ecephys/sub-l_ses-101210_task-r2g_run-001_channels.tsv @@ -0,0 +1,103 @@ +channel_id contact_id sampling_frequency units channel_name file_origin connector_id connector_pin_id nev_dig_factor nb_sorted_units nsx hi_pass_freq lo_pass_freq hi_pass_order lo_pass_order filter_type electrode_reject_HFC electrode_reject_LFC electrode_reject_IFC connector_aligned_ids coordinates_x coordinates_y channel_type +137 n/a 1000 uV ainp9 ../../../sourcedata/l101210-001.ns2 5 9 21516 0 2 n/a 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0.4 EXT +96 96 30000 uV chan96 ../../../sourcedata/l101210-001.ns5 3 32 1000 2 5 0.3 7500 1 3 butterworth FALSE FALSE FALSE 9 3.2 0 EXT diff --git a/microephys_ecephys_bep032/sub-l/ses-101210/ecephys/sub-l_ses-101210_task-r2g_run-001_ecephys.json b/microephys_ecephys_bep032/sub-l/ses-101210/ecephys/sub-l_ses-101210_task-r2g_run-001_ecephys.json new file mode 100644 index 000000000..3019b23b3 --- /dev/null +++ b/microephys_ecephys_bep032/sub-l/ses-101210/ecephys/sub-l_ses-101210_task-r2g_run-001_ecephys.json @@ -0,0 +1,108 @@ +{ + "InstitutionName": "Institut de Neuroscience de la Timone, Marseille, France", + "InstitutionAddress": "Faculté de Médecine, 27, boulevard Jean Moulin, 13005 Marseille, France", + "Collaborators": [ + "Institute of Neuroscience and Medicine (INM-6), 52425 Jülich, Germany", + "Institute for Advanced Simulation (IAS-6), 52425 Jülich, Germany", + "JARA Institute Brain Structure-Function Relationships (INM-10), 52425 Jülich, Germany" + ], +"TaskName": "r2g", +"TaskDescription": "Reach to grasp: A task that involves the reaching of an object and holding it for a specific time", +"TaskType": "Two Cue Task", +"PowerLineFrequency": 60.0, +"Manufacturer": "NI, National Instruments Corporation, Austin, Texas, USA", +"Location": "Inst. de Neurosciences de la Timone (INT), UMR 7289, CNRS - Aix Marseille Univ., Marseille, France", +"SamplingFrequency": 30000.0, +"SerialNumber": "8596-001139", +"Creator": "Thomas Brochier", +"Maintainer": "Thomas Brochier", +"SoftwareFilters": "butterwoth", +"PowerLineFrequencyUnit": "Hz", +"ChannelId": { + "Description": "Unique identifier of the channel" +}, +"ContactId": { + "Description": "Unique identifier of the contact" +}, +"Units": { + "Description": "Units of the recording signal" +}, +"ChannelName": { + "Description": "Custom name of the recording channel" +}, +"FileOrigin": { + "Description": "Source file of the signal" +}, +"ConnectorId": { + "Description": "Id of the connector used for recording the signal" +}, +"ConnectorPinId": { + "Description": "Pin used for recording the signal" +}, +"NevDigFactor": { + "Description": "Digitization factor of the nev file" +}, +"NbSortedUnits": { + "Description": "Number of sorted units on this channel" +}, +"NevHiFreqOrder": { + "Description": "High pass order of the frequency filter" +}, +"NevHiFreqType": { + "Description": "Type of the high pass frequency filter" +}, +"NevLoFreqOrder": { + "Description": "Low pass order of the frequency filter" +}, +"NevLoFreqType": { + "Description": "Type of the high pass frequency filter" +}, +"NsxHiFreqOrder": { + "Description": "Order of the high pass frequency filter" +}, +"NsxLoFreqOrder": { + "Description": "Order of the low pass frequency filter" +}, +"NsxHiFreqType": { + "Description": "Type of the high pass frequency filter" +}, +"NsxLoFreqType": { + "Description": "Type of the low pass frequency filter" +}, +"Nsx": { + "Description": "NsX value used for storing of the signal" +}, +"HiPassFreq": { + "Description": "Cutoff frequency of the high pass filter" +}, +"LoPassFreq": { + "Description": "Cutoff frequency of the low pass filter" +}, +"HiPassOrder": { + "Description": "Order of the high pass filter" +}, +"LoPassOrder": { + "Description": "Order of the low pass filter" +}, +"FilterType": { + "Description": "Type of filter used" +}, +"ElectrodeRejectLfc": { + "Description": "Rejection of the signal in low frequency components (TRUE/FALSE)" +}, +"ElectrodeRejectIfc": { + "Description": "Rejection of the signal in intermediate frequency components (TRUE/FALSE)" +}, +"ElectrodeRejectHfc": { + "Description": "Rejection of the signal in high frequency components (TRUE/FALSE)" +}, +"ConnectorAlignedId": { + "Description": "channelId in a spatially organized grid" +}, +"CoordinatesX": { + "Description": "X-coordinate of the channel" +}, +"CoordinatesY": { + "Description": "Y-coordinate of the channel" +} +} diff --git a/ephys_BEP032/sub-20220101B/ephys/sub-20220101B_ephys.nwb b/microephys_ecephys_bep032/sub-l/ses-101210/ecephys/sub-l_ses-101210_task-r2g_run-001_ecephys.nix similarity index 100% rename from ephys_BEP032/sub-20220101B/ephys/sub-20220101B_ephys.nwb rename to microephys_ecephys_bep032/sub-l/ses-101210/ecephys/sub-l_ses-101210_task-r2g_run-001_ecephys.nix diff --git a/microephys_ecephys_bep032/sub-l/ses-101210/ecephys/sub-l_ses-101210_task-r2g_run-001_electrodes.json b/microephys_ecephys_bep032/sub-l/ses-101210/ecephys/sub-l_ses-101210_task-r2g_run-001_electrodes.json new file mode 100644 index 000000000..40caa1a2b --- /dev/null +++ b/microephys_ecephys_bep032/sub-l/ses-101210/ecephys/sub-l_ses-101210_task-r2g_run-001_electrodes.json @@ -0,0 +1,57 @@ +{ + "electrode_id": { + "description": "Identifier for the electrode. Corresponds to the electrode number on the probe." + }, + "probe_id": { + "description": "Identifier for the probe to which the electrode belongs.", + "levels": { + "Prob-1025-0503": "Probe model 1025-0503" + } + }, + "x": { + "description": "X-coordinate of the electrode position in millimeters, relative to a defined origin (e.g., probe tip or a common anatomical landmark)." + }, + "y": { + "description": "Y-coordinate of the electrode position in millimeters, relative to a defined origin (e.g., probe tip or a common anatomical landmark)." + }, + "z": { + "description": "Z-coordinate of the electrode position in millimeters, relative to a defined origin (e.g., probe tip or a common anatomical landmark)." + }, + "impedance": { + "description": "Measured impedance of the electrode." + }, + "material": { + "description": "Material of the electrode contact.", + "levels": { + "iridium oxide": "Iridium oxide" + } + }, + "location": { + "description": "Anatomical location of the electrode, often referring to a specific brain area.", + "levels": { + "M1": "Primary Motor Cortex" + } + }, + "hemisphere": { + "description": "Hemisphere in which the electrode is located.", + "levels": { + "right": "Right hemisphere", + "left": "Left hemisphere" + } + }, + "connector_aligned_id": { + "description": "Identifier for the aligned connector pin associated with this electrode." + }, + "impedance_unit": { + "description": "Unit of impedance measurement.", + "levels": { + "kOhm": "Kiloohm" + } + }, + "insulation": { + "description": "Type of insulation material used for the electrode.", + "levels": { + "Parylene-c": "Parylene-c" + } + } +} diff --git a/microephys_ecephys_bep032/sub-l/ses-101210/ecephys/sub-l_ses-101210_task-r2g_run-001_electrodes.tsv b/microephys_ecephys_bep032/sub-l/ses-101210/ecephys/sub-l_ses-101210_task-r2g_run-001_electrodes.tsv new file mode 100644 index 000000000..1243ead72 --- /dev/null +++ b/microephys_ecephys_bep032/sub-l/ses-101210/ecephys/sub-l_ses-101210_task-r2g_run-001_electrodes.tsv @@ -0,0 +1,97 @@ +electrode_id probe_id x y z impedance material location hemisphere connector_aligned_id impedance_unit insulation +1 Prob-1025-0503 3.6 0.0 1.5 52 iridium oxide M1 right 91 kOhm Parylene-c +2 Prob-1025-0503 3.6 0.4 1.5 44 iridium oxide M1 right 92 kOhm Parylene-c +3 Prob-1025-0503 3.6 1.2 1.5 50 iridium oxide M1 right 94 kOhm Parylene-c +4 Prob-1025-0503 0.0 0.0 1.5 48 iridium oxide M1 right 1 kOhm Parylene-c +5 Prob-1025-0503 2.8 1.6 1.5 48 iridium oxide M1 right 75 kOhm Parylene-c +6 Prob-1025-0503 3.6 2.0 1.5 46 iridium oxide M1 right 96 kOhm Parylene-c +7 Prob-1025-0503 3.2 1.6 1.5 49 iridium oxide M1 right 85 kOhm Parylene-c +8 Prob-1025-0503 3.6 2.4 1.5 47 iridium oxide M1 right 97 kOhm Parylene-c +9 Prob-1025-0503 3.2 2.0 1.5 48 iridium oxide M1 right 86 kOhm Parylene-c +10 Prob-1025-0503 3.6 2.8 1.5 48 iridium oxide M1 right 98 kOhm Parylene-c +11 Prob-1025-0503 3.2 2.4 1.5 50 iridium oxide M1 right 87 kOhm Parylene-c +12 Prob-1025-0503 3.2 2.8 1.5 50 iridium oxide M1 right 88 kOhm Parylene-c +13 Prob-1025-0503 2.8 2.4 1.5 41 iridium oxide M1 right 77 kOhm Parylene-c +14 Prob-1025-0503 3.6 3.2 1.5 53 iridium oxide M1 right 99 kOhm Parylene-c +15 Prob-1025-0503 2.4 2.0 1.5 46 iridium oxide M1 right 66 kOhm Parylene-c +16 Prob-1025-0503 3.2 3.2 1.5 48 iridium oxide M1 right 89 kOhm Parylene-c +17 Prob-1025-0503 2.8 2.0 1.5 50 iridium oxide M1 right 76 kOhm Parylene-c +18 Prob-1025-0503 3.6 3.6 1.5 55 iridium oxide M1 right 100 kOhm Parylene-c +19 Prob-1025-0503 2.4 2.4 1.5 52 iridium oxide M1 right 67 kOhm Parylene-c +20 Prob-1025-0503 2.8 3.2 1.5 47 iridium oxide M1 right 79 kOhm Parylene-c +21 Prob-1025-0503 2.0 2.8 1.5 55 iridium oxide M1 right 58 kOhm Parylene-c +22 Prob-1025-0503 0.0 3.6 1.5 57 iridium oxide M1 right 10 kOhm Parylene-c +23 Prob-1025-0503 2.8 2.8 1.5 45 iridium oxide M1 right 78 kOhm Parylene-c +24 Prob-1025-0503 2.4 3.6 1.5 53 iridium oxide M1 right 70 kOhm Parylene-c +25 Prob-1025-0503 2.4 2.8 1.5 47 iridium oxide M1 right 68 kOhm Parylene-c +26 Prob-1025-0503 2.0 3.6 1.5 52 iridium oxide M1 right 60 kOhm Parylene-c +27 Prob-1025-0503 2.4 3.2 1.5 46 iridium oxide M1 right 69 kOhm Parylene-c +28 Prob-1025-0503 1.6 3.6 1.5 53 iridium oxide M1 right 50 kOhm Parylene-c +29 Prob-1025-0503 2.0 3.2 1.5 52 iridium oxide M1 right 59 kOhm Parylene-c +30 Prob-1025-0503 1.2 3.6 1.5 51 iridium oxide M1 right 40 kOhm Parylene-c +31 Prob-1025-0503 1.6 3.2 1.5 49 iridium oxide M1 right 49 kOhm Parylene-c +32 Prob-1025-0503 0.8 3.6 1.5 49 iridium oxide M1 right 30 kOhm Parylene-c +33 Prob-1025-0503 3.2 0.8 1.5 44 iridium oxide M1 right 83 kOhm Parylene-c +34 Prob-1025-0503 3.2 1.2 1.5 45 iridium oxide M1 right 84 kOhm Parylene-c +35 Prob-1025-0503 2.8 0.8 1.5 48 iridium oxide M1 right 73 kOhm Parylene-c +36 Prob-1025-0503 2.8 1.2 1.5 48 iridium oxide M1 right 74 kOhm Parylene-c +37 Prob-1025-0503 2.4 0.8 1.5 47 iridium oxide M1 right 63 kOhm Parylene-c +38 Prob-1025-0503 2.4 1.2 1.5 49 iridium oxide M1 right 64 kOhm Parylene-c +39 Prob-1025-0503 2.0 0.8 1.5 46 iridium oxide M1 right 53 kOhm Parylene-c +40 Prob-1025-0503 2.0 1.2 1.5 43 iridium oxide M1 right 54 kOhm Parylene-c +41 Prob-1025-0503 1.6 0.8 1.5 45 iridium oxide M1 right 43 kOhm Parylene-c +42 Prob-1025-0503 2.0 1.6 1.5 48 iridium oxide M1 right 55 kOhm Parylene-c +43 Prob-1025-0503 1.6 1.2 1.5 49 iridium oxide M1 right 44 kOhm Parylene-c +44 Prob-1025-0503 1.6 1.6 1.5 46 iridium oxide M1 right 45 kOhm Parylene-c +45 Prob-1025-0503 1.2 0.8 1.5 45 iridium oxide M1 right 33 kOhm Parylene-c +46 Prob-1025-0503 1.6 2.0 1.5 48 iridium oxide M1 right 46 kOhm Parylene-c +47 Prob-1025-0503 1.2 1.2 1.5 48 iridium oxide M1 right 34 kOhm Parylene-c +48 Prob-1025-0503 2.4 1.6 1.5 45 iridium oxide M1 right 65 kOhm Parylene-c +49 Prob-1025-0503 0.8 1.2 1.5 52 iridium oxide M1 right 24 kOhm Parylene-c +50 Prob-1025-0503 2.0 2.0 1.5 43 iridium oxide M1 right 56 kOhm Parylene-c +51 Prob-1025-0503 1.2 1.6 1.5 48 iridium oxide M1 right 35 kOhm Parylene-c +52 Prob-1025-0503 1.6 2.4 1.5 49 iridium oxide M1 right 47 kOhm Parylene-c +53 Prob-1025-0503 0.8 1.6 1.5 44 iridium oxide M1 right 25 kOhm Parylene-c +54 Prob-1025-0503 2.0 2.4 1.5 43 iridium oxide M1 right 57 kOhm Parylene-c +55 Prob-1025-0503 0.8 2.0 1.5 48 iridium oxide M1 right 26 kOhm Parylene-c +56 Prob-1025-0503 1.2 2.0 1.5 51 iridium oxide M1 right 36 kOhm Parylene-c +57 Prob-1025-0503 0.8 2.4 1.5 90 iridium oxide M1 right 27 kOhm Parylene-c +58 Prob-1025-0503 1.2 2.4 1.5 51 iridium oxide M1 right 37 kOhm Parylene-c +59 Prob-1025-0503 0.8 2.8 1.5 48 iridium oxide M1 right 28 kOhm Parylene-c +60 Prob-1025-0503 1.2 2.8 1.5 48 iridium oxide M1 right 38 kOhm Parylene-c +61 Prob-1025-0503 0.8 3.2 1.5 51 iridium oxide M1 right 29 kOhm Parylene-c +62 Prob-1025-0503 1.6 2.8 1.5 49 iridium oxide M1 right 48 kOhm Parylene-c +63 Prob-1025-0503 0.4 3.2 1.5 50 iridium oxide M1 right 19 kOhm Parylene-c +64 Prob-1025-0503 1.2 3.2 1.5 47 iridium oxide M1 right 39 kOhm Parylene-c +65 Prob-1025-0503 3.2 0.0 1.5 46 iridium oxide M1 right 81 kOhm Parylene-c +66 Prob-1025-0503 3.2 0.4 1.5 48 iridium oxide M1 right 82 kOhm Parylene-c +67 Prob-1025-0503 2.8 0.0 1.5 47 iridium oxide M1 right 71 kOhm Parylene-c +68 Prob-1025-0503 2.8 0.4 1.5 48 iridium oxide M1 right 72 kOhm Parylene-c +69 Prob-1025-0503 2.4 0.0 1.5 67 iridium oxide M1 right 61 kOhm Parylene-c +70 Prob-1025-0503 2.4 0.4 1.5 52 iridium oxide M1 right 62 kOhm Parylene-c +71 Prob-1025-0503 2.0 0.0 1.5 49 iridium oxide M1 right 51 kOhm Parylene-c +72 Prob-1025-0503 2.0 0.4 1.5 45 iridium oxide M1 right 52 kOhm Parylene-c +73 Prob-1025-0503 1.6 0.0 1.5 48 iridium oxide M1 right 41 kOhm Parylene-c +74 Prob-1025-0503 1.6 0.4 1.5 44 iridium oxide M1 right 42 kOhm Parylene-c +75 Prob-1025-0503 1.2 0.0 1.5 57 iridium oxide M1 right 31 kOhm Parylene-c +76 Prob-1025-0503 1.2 0.4 1.5 47 iridium oxide M1 right 32 kOhm Parylene-c +77 Prob-1025-0503 0.8 0.0 1.5 46 iridium oxide M1 right 21 kOhm Parylene-c +78 Prob-1025-0503 0.8 0.4 1.5 48 iridium oxide M1 right 22 kOhm Parylene-c +79 Prob-1025-0503 0.4 0.0 1.5 49 iridium oxide M1 right 11 kOhm Parylene-c +80 Prob-1025-0503 0.4 0.4 1.5 45 iridium oxide M1 right 12 kOhm Parylene-c +81 Prob-1025-0503 0.0 0.4 1.5 54 iridium oxide M1 right 2 kOhm Parylene-c +82 Prob-1025-0503 0.8 0.8 1.5 48 iridium oxide M1 right 23 kOhm Parylene-c +83 Prob-1025-0503 0.0 0.8 1.5 51 iridium oxide M1 right 3 kOhm Parylene-c +84 Prob-1025-0503 0.4 0.8 1.5 49 iridium oxide M1 right 13 kOhm Parylene-c +85 Prob-1025-0503 0.0 1.2 1.5 49 iridium oxide M1 right 4 kOhm Parylene-c +86 Prob-1025-0503 0.4 1.2 1.5 50 iridium oxide M1 right 14 kOhm Parylene-c +87 Prob-1025-0503 0.4 1.6 1.5 52 iridium oxide M1 right 15 kOhm Parylene-c +88 Prob-1025-0503 0.0 1.6 1.5 50 iridium oxide M1 right 5 kOhm Parylene-c +89 Prob-1025-0503 0.4 2.0 1.5 50 iridium oxide M1 right 16 kOhm Parylene-c +90 Prob-1025-0503 0.0 2.0 1.5 49 iridium oxide M1 right 6 kOhm Parylene-c +91 Prob-1025-0503 0.4 2.4 1.5 49 iridium oxide M1 right 17 kOhm Parylene-c +92 Prob-1025-0503 0.0 2.4 1.5 51 iridium oxide M1 right 7 kOhm Parylene-c +93 Prob-1025-0503 0.0 2.8 1.5 52 iridium oxide M1 right 8 kOhm Parylene-c +94 Prob-1025-0503 0.4 2.8 1.5 53 iridium oxide M1 right 18 kOhm Parylene-c +95 Prob-1025-0503 0.4 3.6 1.5 53 iridium oxide M1 right 20 kOhm Parylene-c +96 Prob-1025-0503 0.0 3.2 1.5 54 iridium oxide M1 right 9 kOhm Parylene-c diff --git a/microephys_ecephys_bep032/sub-l/ses-101210/ecephys/sub-l_ses-101210_task-r2g_run-001_events.json b/microephys_ecephys_bep032/sub-l/ses-101210/ecephys/sub-l_ses-101210_task-r2g_run-001_events.json new file mode 100644 index 000000000..ba5722aff --- /dev/null +++ b/microephys_ecephys_bep032/sub-l/ses-101210/ecephys/sub-l_ses-101210_task-r2g_run-001_events.json @@ -0,0 +1,29 @@ +{ + "onset": { + "Description": "Onset of the trial, defined by the 'TS-ON' (Trial Start) event marker.", + "Units": "s" + }, + "duration": { + "Description": "Duration of the trial, calculated as the time difference between the 'STOP' (End of trial) and 'TS-ON' (Trial Start) event markers.", + "Units": "s" + }, + "trial_type": { + "Description": "Categorical type of the trial, indicating the grip and force requirements.", + "Levels": { + "SGLF": "Side Grip Low Force trial (Grip first cueing)", + "SGHF": "Side Grip High Force trial (Grip first cueing)", + "PGLF": "Precision Grip Low Force trial (Grip first cueing)", + "PGHF": "Precision Grip High Force trial (Grip first cueing)", + "LFSG": "Low Force Side Grip trial (Force first cueing)", + "HFSG": "High Force Side Grip trial (Force first cueing)", + "LFPG": "Low Force Precision Grip trial (Force first cueing)", + "HFPG": "High Force Precision Grip trial (Force first cueing)", + "NONE": "No specific trial type (e.g., aborted or non-task related event)" + } + }, + "response_time": { + "Description": "Time of the subject's response, defined by the 'SR' (table switch released) event marker.", + "Units": "s", + "MissingValues": "n/a" + } +} \ No newline at end of file diff --git a/microephys_ecephys_bep032/sub-l/ses-101210/ecephys/sub-l_ses-101210_task-r2g_run-001_events.tsv b/microephys_ecephys_bep032/sub-l/ses-101210/ecephys/sub-l_ses-101210_task-r2g_run-001_events.tsv new file mode 100644 index 000000000..e65138367 --- /dev/null +++ b/microephys_ecephys_bep032/sub-l/ses-101210/ecephys/sub-l_ses-101210_task-r2g_run-001_events.tsv @@ -0,0 +1,365 @@ +onset duration trial_type response_time +1.3060666666666666 3.5283 SGLF 3.6598 +7.123533333333333 3.4729 SGLF 9.243533333333333 +12.7937 2.4491666666666667 PGLF +19.198966666666666 3.5135666666666667 SGHF 21.511333333333332 +25.0113 3.4449 SGHF 27.1913 +30.7554 3.5614 PGHF 33.07603333333333 +36.7154 2.6149333333333334 PGLF +42.0463 3.4060666666666666 SGLF 44.7816 +47.753366666666665 3.1717666666666667 PGLF 50.024966666666666 +53.8 3.4549 SGHF 56.07933333333333 +59.56 3.1491333333333334 SGHF 61.328366666666664 +65.3622 2.887 SGHF 67.8492 +71.289 2.9169666666666666 PGLF 73.2676 +76.993 2.9090333333333333 SGLF 79.6756 +82.70933333333333 2.8436666666666667 PGLF 85.6491 +88.63156666666666 2.903833333333333 SGLF 91.408 +94.5321 2.9079 PGLF 97.2298 +100.3013 2.9059 SGLF 102.98183333333334 +106.05923333333334 2.9069333333333334 PGLF 108.6946 +111.8332 2.9069 SGLF 114.50156666666666 +117.6053 2.9059 PGLF 120.3347 +123.3653 2.9079 SGLF 126.135 +129.1358 2.9059 PGLF 131.9367 +135.0193 2.9059 SGLF 137.9358 +140.7793 2.9069 PGLF 143.588 +146.7593 2.9069 SGLF 149.59 +152.65626666666666 2.9069 SGHF 155.25583333333333 +158.60179999999998 2.9079 PGLF 161.396 +164.40639999999998 2.9069 SGHF 167.3207 +170.1159 2.9059 PGHF 172.9158 +175.8884 2.9069 SGHF 178.614 +181.69393333333333 2.9079 PGLF 184.38796666666667 +187.4725 2.9069 SGHF 190.3347 +193.3653 2.9059 PGHF 196.2041 +199.1358 2.9079 SGHF 201.9358 +204.9125 2.9069 PGHF 207.7466 +210.72926666666667 2.9059 SGHF 213.6315 +216.4925 2.9079 SGLF 219.462 +222.26341666666666 2.9069 SGHF 225.1206 +227.99639999999998 2.9079 PGHF 230.7967 +233.7268 2.9059 PGLF 236.621 +239.5089 2.9079 SGHF 242.3276 +245.3106 2.9069 SGLF 248.243 +251.3286 2.9079 PGLF 254.1337 +257.0288 2.9059 SGHF 259.9347 +263.0136 2.9079 PGLF 265.8687 +268.84386666666665 2.9059 SGLF 271.6938666666667 +274.6391333333333 2.9069 PGLF 277.4715666666667 +280.586 2.9059 PGHF 283.4347 +286.3668 2.9079 PGHF 289.0963 +292.0335 2.9069 SGHF 294.9032 +297.8585 2.9079 PGHF 300.7347 +303.6391 2.9059 SGHF 306.5041 +309.4195 2.9079 PGLF 312.2917 +315.2089 2.9069 SGHF 318.0856 +321.0223 2.9079 PGLF 323.8476 +326.8304 2.9059 SGHF 329.7347 +332.6391 2.9079 PGHF 335.5367 +338.4688 2.9059 PGLF 341.3656 +344.2725 2.9079 SGLF 347.1793 +350.0988 2.9059 PGLF 352.925 +355.8815 2.9079 PGHF 358.7856 +361.6939 2.9059 PGHF 364.5501 +367.4828 2.9079 SGHF 370.3456 +373.2634 2.9059 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2.9079 PGHF 1078.1556 +1081.0423 2.9059 SGLF 1083.8494 +1086.8375 2.9079 PGHF 1089.6506 +1092.6253 2.9059 SGHF 1095.4395 +1098.411 2.9079 PGLF 1101.246 +1104.2155 2.9059 PGHF 1107.0347 +1110.0347 2.9079 SGLF 1112.8787 +1115.8206 2.9059 SGHF 1118.6506 +1121.606 2.9079 PGLF 1124.4395 +1127.3951 2.9059 PGHF 1130.2048 +1133.182 2.9079 SGLF 1135.9688 +1138.9602 2.9059 PGHF 1141.8173 +1144.7543 2.9079 SGLF 1147.5873 +1150.543 2.9059 PGHF 1153.376 +1156.3306 2.9079 SGLF 1159.1556 +1162.064 2.9059 SGHF 1164.9242 +1167.8755 2.9079 PGLF 1170.7048 +1173.6591 2.9059 PGHF 1176.4837 +1179.4325 2.9079 SGLF 1182.2556 +1185.2289 2.9059 SGHF 1188.0347 +1190.9638666666667 2.9079 PGLF 1193.76 +1196.7543 2.9059 PGHF 1199.5873 +1202.543 2.9079 SGLF 1205.3486 +1208.3182 2.9059 SGHF 1211.1556 +1214.0888 2.9079 PGLF 1216.9173 +1219.8755 2.9059 PGHF 1222.7048 +1225.6591 2.9079 SGLF 1228.4837 +1231.44 2.9059 SGHF 1234.2638 +1237.2289 2.9079 PGLF 1240.0347 +1242.975 2.9059 PGHF 1245.7556 +1248.7543 2.9079 SGLF 1251.5873 +1254.543 2.9059 SGHF 1257.376 +1260.3306 2.9079 PGLF 1263.1556 +1266.0423 2.9059 PGHF 1268.8494 +1271.8375 2.9079 SGLF 1274.6506 +1277.6253 2.9059 SGHF 1280.4395 +1283.3868 2.9079 PGLF 1286.2556 +1289.199 2.9059 PGHF 1292.0347 +1294.9888 2.9079 SGLF 1297.8173 +1300.8755 2.9059 SGHF 1303.7048 +1306.6591 2.9079 PGLF 1309.4837 +1312.44 2.9059 PGHF 1315.2638 +1318.2289 2.9079 SGLF 1321.0347 +1324.0163999999999 2.9059 SGHF 1326.8206 +1329.7543 2.9079 PGLF 1332.5873 +1335.543 2.9059 PGHF 1338.376 +1341.3297 2.9079 SGLF 1344.14 +1347.0888 2.9059 PGHF 1349.8951 +1349.975 2.9079 SGHF 1352.8206 +1355.7543 2.9059 PGLF 1358.5873 +1361.543 2.9079 PGHF 1364.376 +1367.3306 2.9059 SGLF 1370.1556 +1373.0423 2.9079 PGLF 1375.8494 +1378.8375 2.9059 PGHF 1381.6506 +1384.6253 2.9079 SGHF 1387.4395 +1390.3868 2.9059 PGLF 1393.2556 +1396.199 2.9079 PGHF 1399.0347 +1402.0163999999999 2.9059 SGHF 1404.8206 +1407.8079 2.9079 PGHF 1410.6385 +1413.591 2.9059 SGHF 1416.3951 +1419.3755 2.9079 PGHF 1422.2048 +1425.163 2.9059 SGHF 1427.9999 +1428.8895 2.9079 PGLF 1431.714 +1434.7543 2.9059 PGHF 1437.5873 +1440.543 2.9079 SGHF 1443.376 +1446.3306 2.9059 PGLF 1449.1556 +1452.0423 2.9079 PGHF 1454.8494 +1457.8375 2.9059 SGHF 1460.6506 +1463.6253 2.9079 PGLF 1466.4395 +1469.3868 2.9059 PGHF 1472.2556 +1475.199 2.9079 SGHF 1478.0347 +1481.0163999999999 2.9059 PGLF 1483.8206 +1486.7543 2.9079 PGHF 1489.5873 +1492.543 2.9059 SGHF 1495.376 +1498.3297 2.9079 PGLF 1501.14 +1504.0888 2.9059 PGHF 1506.8951 +1509.8755 2.9079 SGHF 1512.7048 +1515.6591 2.9059 PGLF 1518.4837 +1521.44 2.9079 PGHF 1524.2638 +1527.2289 2.9059 SGHF 1530.0347 +1533.0163999999999 2.9079 PGLF 1535.8206 +1538.7543 2.9059 PGHF 1541.5873 +1544.543 2.9079 SGHF 1547.3486 +1550.3306 2.9059 PGLF 1553.1556 +1556.0423 2.9079 PGHF 1558.8494 +1561.8375 2.9059 SGHF 1564.6506 +1567.6253 2.9079 PGLF 1570.4395 +1573.3868 2.9059 PGHF 1576.2556 +1579.199 2.9079 SGHF 1582.0347 +1585.0163999999999 2.9059 PGLF 1587.8206 +1590.7543 2.9079 PGHF 1593.5873 +1596.543 2.9059 SGHF 1599.376 +1602.3297 2.9079 PGLF 1605.14 +1608.0888 2.9059 PGHF 1610.8951 +1613.8755 2.9079 SGHF 1616.7048 +1619.6591 2.9059 PGLF 1622.4837 +1625.44 2.9079 PGHF 1628.2638 +1631.2289 2.9059 SGHF 1634.0347 +1636.994 2.9079 PGLF 1639.8173 +1642.7812 2.9059 PGHF 1645.5312 +1648.543 2.9079 SGHF 1651.3556 +1654.3297 2.9059 PGLF 1657.14 +1660.0888 2.9079 PGHF 1662.8951 +1665.8755 2.9059 SGHF 1668.7048 +1671.6591 2.9079 PGLF 1674.4837 +1677.4325 2.9059 PGHF 1680.2638 +1683.2289 2.9079 SGHF 1686.0347 +1688.9888 2.9059 PGLF 1691.8173 +1694.7543 2.9079 PGHF 1697.5873 +1700.543 2.9059 SGHF 1703.376 +1706.3306 2.9079 PGLF 1709.1556 +1712.064 2.9059 PGHF 1714.9242 +1717.8755 2.9079 SGHF 1720.7048 +1723.6591 2.9059 PGLF 1726.4837 +1729.4325 2.9079 PGHF 1732.2556 +1735.2289 2.9059 SGHF 1738.0347 +1740.9638666666667 2.9079 PGLF 1743.76 +1746.7543 2.9059 PGHF 1749.5873 +1752.543 2.9079 SGHF 1755.3486 +1758.3182 2.9059 PGLF 1761.1556 +1764.0888 2.9079 PGHF 1766.9173 +1769.8755 2.9059 SGHF 1772.7048 +1775.6591 2.9079 PGLF 1778.4837 +1781.44 2.9059 PGHF 1784.2638 +1787.2289 2.9079 SGHF 1790.0347 +1792.975 2.9059 PGLF 1795.7556 +1798.7543 2.9079 PGHF 1801.5873 +1804.543 2.9059 SGHF 1807.3486 +1810.3182 2.9079 PGLF 1813.1556 +1816.0888 2.9059 PGHF 1818.8951 +1819.2289 2.9079 SGLF 1822.0347 +1825.0163999999999 2.9059 SGHF 1827.8206 +1830.799 2.9079 PGLF 1833.5125 +1836.5875 2.9059 PGHF 1839.376 +1842.3486 2.9079 SGLF 1845.2638 +1848.2535 2.9059 SGHF 1851.0638 +1854.0163999999999 2.9079 PGLF 1856.8787 +1859.8375 2.9059 PGHF 1862.6506 +1865.6253 2.9079 SGLF 1868.4557 +1871.3951 2.9059 SGHF 1874.246 +1877.199 2.9079 PGLF 1880.0347 +1882.9888 2.9059 PGHF 1885.8173 +1888.8895 2.9079 SGLF 1891.714 +1894.7543 2.9059 SGHF 1897.5873 +1900.543 2.9079 PGLF 1903.376 +1906.3306 2.9059 PGHF 1909.1556 +1912.064 2.9059 SGLF 1914.9242 +1917.8755 2.9079 PGHF 1920.7048 +1923.6591 2.9059 SGLF 1926.4837 +1929.4325 2.9079 PGHF 1932.2556 +1935.2289 2.9059 SGLF 1938.0347 +1941.0163999999999 2.9079 SGHF 1943.8494 +1946.7543 2.9059 PGLF 1949.5873 +1952.5312 2.9079 PGHF 1955.3486 +1958.3182 2.9059 SGLF 1961.1556 +1964.0888 2.9079 SGHF 1966.9173 +1969.8755 2.9059 PGLF 1972.7048 +1975.6591 2.9079 PGHF 1978.4837 +1981.44 2.9059 SGLF 1984.2638 +1987.2289 2.9079 PGHF 1990.0347 +1993.0163999999999 2.9059 SGLF 1995.8206 +1998.799 2.9079 SGHF 2001.6109 +2004.543 2.9059 PGLF 2007.376 +2010.3306 2.9079 PGHF 2013.1556 +2016.1189 2.9059 SGLF 2018.9242 +2021.8951 2.9079 SGHF 2024.7048 +2027.6591 2.9059 PGLF 2030.4837 +2033.4325 2.9079 PGHF 2036.246 +2039.2289 2.9059 SGLF 2042.0347 +2045.0163999999999 2.9079 SGHF 2047.8494 +2050.799 2.9059 PGLF 2053.5937 +2056.5875 2.9079 PGHF 2059.376 +2062.3486 2.9059 PGHF 2065.1556 +2062.27812 2.9059 PGLF 2065.0347 +2068.01639999999997 2.9079 SGLF 2070.8206 +2073.7293 2.9059 PGLF 2076.5312 +2079.5289 2.9079 SGLF 2082.3126 \ No newline at end of file diff --git a/microephys_ecephys_bep032/sub-l/ses-101210/ecephys/sub-l_ses-101210_task-r2g_run-001_probes.json b/microephys_ecephys_bep032/sub-l/ses-101210/ecephys/sub-l_ses-101210_task-r2g_run-001_probes.json new file mode 100644 index 000000000..4c4c2d129 --- /dev/null +++ b/microephys_ecephys_bep032/sub-l/ses-101210/ecephys/sub-l_ses-101210_task-r2g_run-001_probes.json @@ -0,0 +1,71 @@ +{ + "probe_id": { + "description": "Unique identifier for the probe." + }, + "type": { + "description": "Type of the probe." + }, + "location": { + "description": "Anatomical location where the probe was implanted, often referring to a specific brain area.", + "levels": { + "M1": "Primary Motor Cortex" + } + }, + "manufacturer": { + "description": "Manufacturer of the probe." + }, + "device_serial_number": { + "description": "Serial number of the specific probe device." + }, + "electrode_count": { + "description": "Total number of electrodes on the probe." + }, + "width": { + "description": "Width of the probe in specified units." + }, + "height": { + "description": "Height of the probe in specified units." + }, + "depth": { + "description": "Depth of the probe in specified units." + }, + "hemisphere": { + "description": "Hemisphere in which the probe was implanted.", + "levels": { + "right": "Right hemisphere" + } + }, + "placement_picture": { + "description": "URL to a picture illustrating the probe's placement." + }, + "dimension_units": { + "description": "Units for probe dimensions (width, height, depth).", + "levels": { + "mm": "Millimeters" + } + }, + "wires_material": { + "description": "Material of the probe's wires.", + "levels": { + "Pt/Au": "Platinum/Gold alloy" + } + }, + "wires_diameter": { + "description": "Diameter of the probe's wires." + }, + "wires_length": { + "description": "Length of the probe's wires." + }, + "wires_units": { + "description": "Units for wire dimensions (diameter, length).", + "levels": { + "m": "Meters" + } + }, + "owner": { + "description": "Institution or entity that owns the probe.", + "levels": { + "RIKEN-BSI, Japan": "RIKEN Brain Science Institute, Japan" + } + } +} diff --git a/microephys_ecephys_bep032/sub-l/ses-101210/ecephys/sub-l_ses-101210_task-r2g_run-001_probes.tsv b/microephys_ecephys_bep032/sub-l/ses-101210/ecephys/sub-l_ses-101210_task-r2g_run-001_probes.tsv new file mode 100644 index 000000000..3af9fc613 --- /dev/null +++ b/microephys_ecephys_bep032/sub-l/ses-101210/ecephys/sub-l_ses-101210_task-r2g_run-001_probes.tsv @@ -0,0 +1,2 @@ +probe_id type location manufacturer device_serial_number electrode_count width height depth hemisphere placement_picture dimension_units wires_material wires_diameter wires_length wires_units owner +prob-1025-0503 utah array M1 Blackrock Microsystems 1025-0503 100 4 4 1.5 right https://www.nature.com/articles/sdata201855/figures/1 mm Pt/Au 2.5e-05 0.04 m RIKEN-BSI, Japan diff --git a/microephys_ecephys_bep032/sub-l/sub-l_acq-photo1_photo.png b/microephys_ecephys_bep032/sub-l/sub-l_acq-photo1_photo.png new file mode 100644 index 000000000..f003a0e7f Binary files /dev/null and b/microephys_ecephys_bep032/sub-l/sub-l_acq-photo1_photo.png differ diff --git a/microephys_ecephys_bep032/sub-l/sub-l_sessions.json b/microephys_ecephys_bep032/sub-l/sub-l_sessions.json new file mode 100644 index 000000000..5af720110 --- /dev/null +++ b/microephys_ecephys_bep032/sub-l/sub-l_sessions.json @@ -0,0 +1,29 @@ +{ + "session_id": { + "Description": "Unique identifier of the session" + }, + "acq_time": { + "Description": "Time of the recording" + }, + "duration": { + "Description": "Duration of the recording" + }, + "session_quality": { + "Description": "General quality of the session (excellent/good/ok/bad)" + }, + "data_quality": { + "Description": "Quality of the recorded data (excellent/good/ok/bad)" + }, + "#_trials": { + "Description": "Number of trial within the session" + }, + "comment": { + "Description": "Comment by the experimenter" + }, + "weekday": { + "Description": "Day of the week the recording was performed (monday,tuesday,...)" + }, + "noisy": { + "Description": "Was noise observed in the data during the recording (yes/no)" + } +} \ No newline at end of file diff --git a/microephys_ecephys_bep032/sub-l/sub-l_sessions.tsv b/microephys_ecephys_bep032/sub-l/sub-l_sessions.tsv new file mode 100644 index 000000000..392fcbf39 --- /dev/null +++ b/microephys_ecephys_bep032/sub-l/sub-l_sessions.tsv @@ -0,0 +1,2 @@ +session_id acq_time duration session_quality data_quality #_trials comment weekday noisy +101210 2010-12-10T10:50:10 00:11:49.248 excellent good 204 friday yes diff --git a/ephys_BEP032/README.md b/microephys_icephys_bep032/README.md similarity index 100% rename from ephys_BEP032/README.md rename to microephys_icephys_bep032/README.md diff --git a/ephys_BEP032/dataset_description.json b/microephys_icephys_bep032/dataset_description.json similarity index 100% rename from ephys_BEP032/dataset_description.json rename to microephys_icephys_bep032/dataset_description.json diff --git a/ephys_BEP032/participants.tsv b/microephys_icephys_bep032/participants.tsv similarity index 100% rename from ephys_BEP032/participants.tsv rename to microephys_icephys_bep032/participants.tsv diff --git a/ephys_BEP032/samples.json b/microephys_icephys_bep032/samples.json similarity index 100% rename from ephys_BEP032/samples.json rename to microephys_icephys_bep032/samples.json diff --git a/ephys_BEP032/samples.tsv b/microephys_icephys_bep032/samples.tsv similarity index 100% rename from ephys_BEP032/samples.tsv rename to microephys_icephys_bep032/samples.tsv diff --git a/ephys_BEP032/sub-20220101A/ephys/sub-20220101A_channels.tsv b/microephys_icephys_bep032/sub-20220101A/icephys/sub-20220101A_channels.tsv similarity index 100% rename from ephys_BEP032/sub-20220101A/ephys/sub-20220101A_channels.tsv rename to microephys_icephys_bep032/sub-20220101A/icephys/sub-20220101A_channels.tsv diff --git a/ephys_BEP032/sub-20220101A/ephys/sub-20220101A_contacts.tsv b/microephys_icephys_bep032/sub-20220101A/icephys/sub-20220101A_contacts.tsv similarity index 100% rename from ephys_BEP032/sub-20220101A/ephys/sub-20220101A_contacts.tsv rename to microephys_icephys_bep032/sub-20220101A/icephys/sub-20220101A_contacts.tsv diff --git a/ephys_BEP032/sub-20220101A/ephys/sub-20220101A_ephys.json b/microephys_icephys_bep032/sub-20220101A/icephys/sub-20220101A_ephys.json similarity index 100% rename from ephys_BEP032/sub-20220101A/ephys/sub-20220101A_ephys.json rename to microephys_icephys_bep032/sub-20220101A/icephys/sub-20220101A_ephys.json diff --git a/microephys_icephys_bep032/sub-20220101A/icephys/sub-20220101A_ephys.nwb b/microephys_icephys_bep032/sub-20220101A/icephys/sub-20220101A_ephys.nwb new file mode 100644 index 000000000..e69de29bb diff --git a/ephys_BEP032/sub-20220101A/ephys/sub-20220101A_events.json b/microephys_icephys_bep032/sub-20220101A/icephys/sub-20220101A_events.json similarity index 100% rename from ephys_BEP032/sub-20220101A/ephys/sub-20220101A_events.json rename to microephys_icephys_bep032/sub-20220101A/icephys/sub-20220101A_events.json diff --git a/ephys_BEP032/sub-20220101A/ephys/sub-20220101A_events.tsv b/microephys_icephys_bep032/sub-20220101A/icephys/sub-20220101A_events.tsv similarity index 100% rename from ephys_BEP032/sub-20220101A/ephys/sub-20220101A_events.tsv rename to microephys_icephys_bep032/sub-20220101A/icephys/sub-20220101A_events.tsv diff --git a/ephys_BEP032/sub-20220101A/ephys/sub-20220101A_probes.tsv b/microephys_icephys_bep032/sub-20220101A/icephys/sub-20220101A_probes.tsv similarity index 100% rename from ephys_BEP032/sub-20220101A/ephys/sub-20220101A_probes.tsv rename to microephys_icephys_bep032/sub-20220101A/icephys/sub-20220101A_probes.tsv diff --git a/ephys_BEP032/sub-20220101A/sub-20220101A_scans.tsv b/microephys_icephys_bep032/sub-20220101A/sub-20220101A_scans.tsv similarity index 100% rename from ephys_BEP032/sub-20220101A/sub-20220101A_scans.tsv rename to microephys_icephys_bep032/sub-20220101A/sub-20220101A_scans.tsv diff --git a/ephys_BEP032/sub-20220101B/ephys/sub-20220101B_channels.tsv b/microephys_icephys_bep032/sub-20220101B/icephys/sub-20220101B_channels.tsv similarity index 100% rename from ephys_BEP032/sub-20220101B/ephys/sub-20220101B_channels.tsv rename to microephys_icephys_bep032/sub-20220101B/icephys/sub-20220101B_channels.tsv diff --git a/ephys_BEP032/sub-20220101B/ephys/sub-20220101B_contacts.tsv b/microephys_icephys_bep032/sub-20220101B/icephys/sub-20220101B_contacts.tsv similarity index 100% rename from ephys_BEP032/sub-20220101B/ephys/sub-20220101B_contacts.tsv rename to microephys_icephys_bep032/sub-20220101B/icephys/sub-20220101B_contacts.tsv diff --git a/ephys_BEP032/sub-20220101B/ephys/sub-20220101B_ephys.json b/microephys_icephys_bep032/sub-20220101B/icephys/sub-20220101B_ephys.json similarity index 100% rename from ephys_BEP032/sub-20220101B/ephys/sub-20220101B_ephys.json rename to microephys_icephys_bep032/sub-20220101B/icephys/sub-20220101B_ephys.json diff --git a/microephys_icephys_bep032/sub-20220101B/icephys/sub-20220101B_ephys.nwb b/microephys_icephys_bep032/sub-20220101B/icephys/sub-20220101B_ephys.nwb new file mode 100644 index 000000000..e69de29bb diff --git a/ephys_BEP032/sub-20220101B/ephys/sub-20220101B_events.json b/microephys_icephys_bep032/sub-20220101B/icephys/sub-20220101B_events.json similarity index 100% rename from ephys_BEP032/sub-20220101B/ephys/sub-20220101B_events.json rename to microephys_icephys_bep032/sub-20220101B/icephys/sub-20220101B_events.json diff --git a/ephys_BEP032/sub-20220101B/ephys/sub-20220101B_events.tsv b/microephys_icephys_bep032/sub-20220101B/icephys/sub-20220101B_events.tsv similarity index 100% rename from ephys_BEP032/sub-20220101B/ephys/sub-20220101B_events.tsv rename to microephys_icephys_bep032/sub-20220101B/icephys/sub-20220101B_events.tsv diff --git a/ephys_BEP032/sub-20220101B/ephys/sub-20220101B_probes.tsv b/microephys_icephys_bep032/sub-20220101B/icephys/sub-20220101B_probes.tsv similarity index 100% rename from ephys_BEP032/sub-20220101B/ephys/sub-20220101B_probes.tsv rename to microephys_icephys_bep032/sub-20220101B/icephys/sub-20220101B_probes.tsv diff --git a/ephys_BEP032/sub-20220101B/sub-20220101B_scans.tsv b/microephys_icephys_bep032/sub-20220101B/sub-20220101B_scans.tsv similarity index 100% rename from ephys_BEP032/sub-20220101B/sub-20220101B_scans.tsv rename to microephys_icephys_bep032/sub-20220101B/sub-20220101B_scans.tsv