Merge remote-tracking branch 'upstream/maint/1.10.0'

Author: effigies

src/appendices/qmri.md

@@ -303,7 +303,7 @@ and a guide for using macros can be found at
 | -------------------- | ---------------------------------------------------------------------------------------------------- |
 | TB1DAM               | `FlipAngle`                                                                                          |
 | TB1EPI               | `EchoTime`, `FlipAngle`, `TotalReadoutTime`, `MixingTime`                                            |
-| TB1AFI               | `RepetitionTime`                                                                                     |
+| TB1AFI               | `RepetitionTimeExcitation`                                                                           |
 | TB1TFL               |                                                                                                      |
 | TB1RFM               |                                                                                                      |
 | TB1SRGE<sup>\*</sup> | `FlipAngle`, `InversionTime`, `RepetitionTimeExcitation`, `RepetitionTimePreperation`, `NumberShots` |

src/schema/rules/sidecars/qmri.yaml

@@ -0,0 +1,104 @@
+---
+# Anatomical qMRI sequences
+VariableFlipAngleMetadata:
+  selectors:
+    - suffix == "VFA"
+    - match(extension, "^\.nii(\.gz)?$")
+  fields:
+    FlipAngle: required
+    PulseSequenceType: required
+    RepetitionTimeExcitation: required
+
+InversionRecoveryT1Metadata:
+  selectors:
+    - suffix == "IRT1"
+    - match(extension, "^\.nii(\.gz)?$")
+  fields:
+    InversionTime: required
+
+MP2RAGEMetadata:
+  selectors:
+    - suffix == "MP2RAGE"
+    - match(extension, "^\.nii(\.gz)?$")
+  fields:
+    FlipAngle: required
+    InversionTime: required
+    RepetitionTimeExcitation: required
+    RepetitionTimePreparation: required
+    NumberShots: required
+    MagneticFieldStrength: required
+
+MESpinEchoMetadata:
+  selectors:
+    - suffix == "MESE"
+    - match(extension, "^\.nii(\.gz)?$")
+  fields:
+    EchoTime: required
+
+MEGradientEchoMetadata:
+  selectors:
+    - suffix == "MEGRE"
+    - match(extension, "^\.nii(\.gz)?$")
+  fields:
+    EchoTime: required
+
+MTRatioMetadata:
+  selectors:
+    - suffix == "MTR"
+    - match(extension, "^\.nii(\.gz)?$")
+  fields:
+    MTState: required
+
+MTSaturationMetadata:
+  selectors:
+    - suffix == "MTS"
+    - match(extension, "^\.nii(\.gz)?$")
+  fields:
+    FlipAngle: required
+    MTState: required
+    RepetitionTimeExcitation: required
+
+MultiParametricMappingMetadata:
+  selectors:
+    - suffix == "MPM"
+    - match(extension, "^\.nii(\.gz)?$")
+  fields:
+    FlipAngle: required
+    MTState: required
+    RepetitionTimeExcitation: required
+
+# Field mapping qMRI sequences
+TB1DAMMetadata:
+  selectors:
+    - suffix == "TB1DAM"
+    - match(extension, "^\.nii(\.gz)?$")
+  fields:
+    FlipAngle: required
+
+TB1EPIMetadata:
+  selectors:
+    - suffix == "TB1EPI"
+    - match(extension, "^\.nii(\.gz)?$")
+  fields:
+    EchoTime: required
+    FlipAngle: required
+    TotalReadoutTime: required
+    MixingTime: required
+
+TB1AFIMetadata:
+  selectors:
+    - suffix == "TB1AFI"
+    - match(extension, "^\.nii(\.gz)?$")
+  fields:
+    RepetitionTimeExcitation: required
+
+TB1SRGEMetadata:
+  selectors:
+    - suffix == "TB1SRGE"
+    - match(extension, "^\.nii(\.gz)?$")
+  fields:
+    FlipAngle: required
+    InversionTime: required
+    RepetitionTimeExcitation: required
+    RepetitionTimePreparation: required
+    NumberShots: required

tools/schemacode/pyproject.toml

@@ -111,3 +111,11 @@ source = [
 
 [tool.coverage.run]
 parallel = true
+
+[tool.bumpver]
+current_version = "1.1.0-dev"
+version_pattern = "MAJOR.MINOR.PATCH[-TAG]"
+commit = false
+
+[tool.bumpver.file_patterns]
+"src/bidsschematools/data/schema/SCHEMA_VERSION" = ['{version}']