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Merge pull request #718 from bigbio/dev
Definition of Data acquisition method in the specification [DO NOT MERGE]
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‎README.md‎

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# Proteomics Sample Metadata Format
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[![Version](https://flat.badgen.net/static/sdrf-proteomics/1.0.0/orange)](CHANGELOG.md)
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[![Version](https://flat.badgen.net/static/sdrf-proteomics/1.0.1/orange)](CHANGELOG.md)
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[![License](https://flat.badgen.net/github/license/bigbio/proteomics-metadata-standard)](https://github.com/bigbio/proteomics-metadata-standard/blob/master/LICENSE)
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[![Open Issues](https://flat.badgen.net/github/open-issues/HUPO-PSI/mzSpecLib)](https://github.com/bigbio/proteomics-metadata-standard/issues)
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[![Open PRs](https://flat.badgen.net/github/open-prs/bigbio/proteomics-metadata-standard)](https://github.com/bigbio/proteomics-metadata-standard/pulls)

‎annotated-projects/MSV000078494/MSV000078494.sdrf.tsv‎

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‎annotated-projects/MSV000078535/MSV000078535.sdrf.tsv‎

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‎annotated-projects/MSV000078555/MSV000078555.sdrf.tsv‎

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‎annotated-projects/PXD011967/PXD011967.sdrf.tsv‎

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‎annotated-projects/PXD018830/PXD018830-DIA.sdrf.tsv‎

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‎annotated-projects/PXD019185_PXD018883/PXD019185_PXD018883.sdrf.tsv‎

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‎annotated-projects/PXD020187/PXD020187.sdrf.tsv‎

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source name characteristics[organism] characteristics[organism part] characteristics[cell type] characteristics[region] characteristics[age] characteristics[ancestry category] characteristics[sex] characteristics[disease] characteristics[biological replicate] characteristics[individual] characteristics[proteomexchange accession number] assay name comment[data file] comment[file uri] comment[technial replicate] comment[fraction identifier] comment[instrument] comment[modification parameters] comment[modification parameters] comment[cleavage agent details] comment[label] comment[precursor mass tolerance] comment[fragment mass tolerance] factor value[disease]
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source name characteristics[organism] characteristics[organism part] characteristics[cell type] characteristics[region] characteristics[age] characteristics[ancestry category] characteristics[sex] characteristics[disease] characteristics[biological replicate] characteristics[individual] characteristics[proteomexchange accession number] assay name comment[data file] comment[file uri] comment[technical replicate] comment[fraction identifier] comment[instrument] comment[modification parameters] comment[modification parameters] comment[cleavage agent details] comment[label] comment[precursor mass tolerance] comment[fragment mass tolerance] factor value[disease]
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Sample 1 homo sapiens human umbilical cord (hUC) not available decellularized human umbilical arteries (hUAs) not available not available not available native_1 1 1 PXD020187 run 1 D1_Nat_1.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/08/PXD020187/D1_Nat_1.raw 1 1 AC=MS:1000447;NT=LTQ NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 AC=MS:1001251;NT=Trypsin label free 10 ppm 0.05 Da native_1
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Sample 1 homo sapiens human umbilical cord (hUC) not available decellularized human umbilical arteries (hUAs) not available not available not available native_2 1 1 PXD020187 run 2 D2_Nat_2.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/08/PXD020187/D2_Nat_2.raw 1 1 AC=MS:1000447;NT=LTQ NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:36 AC=MS:1001251;NT=Trypsin label free 10 ppm 0.05 Da native_2
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Sample 1 homo sapiens human umbilical cord (hUC) not available decellularized human umbilical arteries (hUAs) not available not available not available native_3 1 1 PXD020187 run 3 D3_Nat_3.raw https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/08/PXD020187/D3_Nat_3.raw 1 1 AC=MS:1000447;NT=LTQ NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:37 AC=MS:1001251;NT=Trypsin label free 10 ppm 0.05 Da native_3

‎annotated-projects/PXD023707/PXD023707.sdrf.tsv‎

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source name characteristics[biological replicate] characteristics[organism] characteristics[organism part] characteristics[cell type] characteristics[age] characteristics[ancestry category] characteristics[sex] characteristics[disease] characteristics[individual] characteristics[enrichment process] assay name technology type comment[cleavage agent details] comment[cleavage agent details] comment[cleavage agent details] comment[fractionation method] comment[fraction identifier] comment[fragment mass tolerance] comment[precursor mass tolerance] comment[technical replicate] comment[instrument] comment[label] comment[modification parameters] comment[modification parameters] comment[modification parameters] comment[modification parameters] comment[modification parameters] comment[modification parameters] comment[tool metadata] comment[file uri] comment[data file] factor value[disease]
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fallopian tube sample 1 homo sapiens fallopian tube fallopian tube ciliated cell 43Y caucasian F cancer or benign tumor 1 NT= Extraction purification;AC=NCIT:C113061 run 1 proteomic profilling by mass spectrometry NT=Trypsin;AC=MS:1001251 NT=Lys-C;AC=MS:1001309 NT=N-glycosidase F;AC=CHMO:0002921 not applicable not applicable 0.20 Da 10 ppm 1 NT=Q Exactive HF;AC=MS:1002523 label free sample NT=Carbamidomethyl;AC=4;CF=H(3) C(2) N O;MM=57.021464;MT=Fixed;PP=Anywhere;TA=C NT=Gln->pyro-Glu;AC=Unimod:28;MT=Variable;PP=Protein N-term;TA=Q NT=Deamidated;AC=Unimod:7;MT=Variable;PP=Anywhere;TA=N','Q NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=M,K,P NT=Lys-> Pyl ;MT=Fixed;PP=Anywhere;TA=K;CF=C12H21N3O3;MM=-110 NT=Delta: S(-1)Se(1);MT=Fixed;PP=Anywhere;TA=C;CF=C3H7NO2Se;MM=49; PMID= 12148805 lesSDRF v0.1.0 https://ftp.pride.ebi.ac.uk/pride/data/archive/2021/11/PXD023707/20201009_MSC419_1.raw 20201009_MSC419_1.raw cancer or benign tumor
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fallopian tube sample 1 homo sapiens fallopian tube fallopian tube ciliated cell 43Y caucasian F cancer or benign tumor 1 NT= Extraction purification;AC=NCIT:C113061 run 2 proteomic profilling by mass spectrometry NT=Trypsin;AC=MS:1001251 NT=Lys-C;AC=MS:1001309 NT=N-glycosidase F;AC=CHMO:0002921 not applicable not applicable 0.20 Da 10 ppm 2 NT=Q Exactive HF;AC=MS:1002523 label free sample NT=Carbamidomethyl;AC=4;CF=H(3) C(2) N O;MM=57.021464;MT=Fixed;PP=Anywhere;TA=C NT=Gln->pyro-Glu;AC=Unimod:28;MT=Variable;PP=Protein N-term;TA=Q NT=Deamidated;AC=Unimod:7;MT=Variable;PP=Anywhere;TA=N','Q NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=M,K,P NT=Lys-> Pyl ;MT=Fixed;PP=Anywhere;TA=K;CF=C12H21N3O3;MM=-110 NT=Delta: S(-1)Se(1);MT=Fixed;PP=Anywhere;TA=C;CF=C3H7NO2Se;MM=49; PMID= 12148805 lesSDRF v0.1.0 https://ftp.pride.ebi.ac.uk/pride/data/archive/2021/11/PXD023707/20201114_MSC419_1-2.raw 20201114_MSC419_1-2.raw cancer or benign tumor
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fallopian tube sample 1 homo sapeins fallopian tube fallopian tube ciliated cell 43Y caucasian F cancer or benign tumor 1 NT= Extraction purification;AC=NCIT:C113061 run 3 proteomic profilling by mass spectrometry NT=Trypsin;AC=MS:1001251 NT=Lys-C;AC=MS:1001309 NT=N-glycosidase F;AC=CHMO:0002921 not applicable not applicable 0.20 Da 10 ppm 3 NT=Q Exactive HF;AC=MS:1002523 label free sample NT=Carbamidomethyl;AC=4;CF=H(3) C(2) N O;MM=57.021464;MT=Fixed;PP=Anywhere;TA=C NT=Gln->pyro-Glu;AC=Unimod:28;MT=Variable;PP=Protein N-term;TA=Q NT=Deamidated;AC=Unimod:7;MT=Variable;PP=Anywhere;TA=N','Q NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=M,K,P NT=Lys-> Pyl ;MT=Fixed;PP=Anywhere;TA=K;CF=C12H21N3O3;MM=-110 NT=Delta: S(-1)Se(1);MT=Fixed;PP=Anywhere;TA=C;CF=C3H7NO2Se;MM=49; PMID= 12148805 lesSDRF v0.1.0 https://ftp.pride.ebi.ac.uk/pride/data/archive/2021/11/PXD023707/20201114_MSC419_1-3.raw 20201114_MSC419_1-3.raw cancer or benign tumor
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fallopian tube sample 1 homo sapiens fallopian tube fallopian tube ciliated cell 43Y caucasian F cancer or benign tumor 1 NT= Extraction purification;AC=NCIT:C113061 run 1 proteomic profilling by mass spectrometry NT=Trypsin;AC=MS:1001251 NT=Lys-C;AC=MS:1001309 NT=N-glycosidase F;AC=CHMO:0002921 not applicable not applicable 0.20 Da 10 ppm 1 NT=Q Exactive HF;AC=MS:1002523 label free sample NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=C NT=Gln->pyro-Glu;AC=Unimod:28;MT=Variable;PP=Protein N-term;TA=Q NT=Deamidated;AC=Unimod:7;MT=Variable;PP=Anywhere;TA=N','Q NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=M,K,P NT=Lys-> Pyl ;MT=Fixed;PP=Anywhere;TA=K;CF=C12H21N3O3;MM=-110 NT=Delta: S(-1)Se(1);MT=Fixed;PP=Anywhere;TA=C;CF=C3H7NO2Se;MM=49; PMID= 12148805 lesSDRF v0.1.0 https://ftp.pride.ebi.ac.uk/pride/data/archive/2021/11/PXD023707/20201009_MSC419_1.raw 20201009_MSC419_1.raw cancer or benign tumor
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fallopian tube sample 1 homo sapiens fallopian tube fallopian tube ciliated cell 43Y caucasian F cancer or benign tumor 1 NT= Extraction purification;AC=NCIT:C113061 run 2 proteomic profilling by mass spectrometry NT=Trypsin;AC=MS:1001251 NT=Lys-C;AC=MS:1001309 NT=N-glycosidase F;AC=CHMO:0002921 not applicable not applicable 0.20 Da 10 ppm 2 NT=Q Exactive HF;AC=MS:1002523 label free sample NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=C NT=Gln->pyro-Glu;AC=Unimod:28;MT=Variable;PP=Protein N-term;TA=Q NT=Deamidated;AC=Unimod:7;MT=Variable;PP=Anywhere;TA=N','Q NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=M,K,P NT=Lys-> Pyl ;MT=Fixed;PP=Anywhere;TA=K;CF=C12H21N3O3;MM=-110 NT=Delta: S(-1)Se(1);MT=Fixed;PP=Anywhere;TA=C;CF=C3H7NO2Se;MM=49; PMID= 12148805 lesSDRF v0.1.0 https://ftp.pride.ebi.ac.uk/pride/data/archive/2021/11/PXD023707/20201114_MSC419_1-2.raw 20201114_MSC419_1-2.raw cancer or benign tumor
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fallopian tube sample 1 homo sapiens fallopian tube fallopian tube ciliated cell 43Y caucasian F cancer or benign tumor 1 NT= Extraction purification;AC=NCIT:C113061 run 3 proteomic profilling by mass spectrometry NT=Trypsin;AC=MS:1001251 NT=Lys-C;AC=MS:1001309 NT=N-glycosidase F;AC=CHMO:0002921 not applicable not applicable 0.20 Da 10 ppm 3 NT=Q Exactive HF;AC=MS:1002523 label free sample NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=C NT=Gln->pyro-Glu;AC=Unimod:28;MT=Variable;PP=Protein N-term;TA=Q NT=Deamidated;AC=Unimod:7;MT=Variable;PP=Anywhere;TA=N','Q NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=M,K,P NT=Lys-> Pyl ;MT=Fixed;PP=Anywhere;TA=K;CF=C12H21N3O3;MM=-110 NT=Delta: S(-1)Se(1);MT=Fixed;PP=Anywhere;TA=C;CF=C3H7NO2Se;MM=49; PMID= 12148805 lesSDRF v0.1.0 https://ftp.pride.ebi.ac.uk/pride/data/archive/2021/11/PXD023707/20201114_MSC419_1-3.raw 20201114_MSC419_1-3.raw cancer or benign tumor

‎annotated-projects/PXD051889/PXD051889.sdrf.tsv‎

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source name characteristics[age] characteristics[ancestry category] characteristics[biological replicate] characteristics[cell type] characteristics[compound] characteristics[developmental stage] characteristics[disease] characteristics[enrichment process] characteristics[individual] characteristics[organism part] characteristics[organism] characteristics[sex] technology type assay name comment[cleavage agent details] comment[data file] comment[fraction identifier] comment[fragment mass tolerance] comment[instrument] comment[label] comment[modification parameters] comment[modification parameters] comment[modification parameters] comment[modification parameters] comment[precursor mass tolerance] comment[technical replicate] comment[tool metadata]
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214 Not available Not available 1 not applicable Trametinib Not applicable Not applicable enrichment of phosphorylated protein 1 brain Mus musculus F proteomic profiling by mass spectrometry Run 1 NT=Trypsin/P QX32029GM 1 20 ppm Q Exactive HF-X label free sample NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=['C'] NT=Acetyl;AC=Unimod:1;MT=Variable;PP=Protein N-term;TA=[] NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=['M'] NT=Phospho;AC=Unimod:21;MT=Variable;PP=Anywhere;TA=S,Y,T 4.5 ppm 1 lesSDRF v0.1.0
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226 Not available Not available 2 not applicable Vehicle Not applicable Not applicable enrichment of phosphorylated protein 2 brain Mus musculus F proteomic profiling by mass spectrometry Run 2 NT=Trypsin/P QX32032GM 1 20 ppm Q Exactive HF-X label free sample NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=['C'] NT=Acetyl;AC=Unimod:1;MT=Variable;PP=Protein N-term;TA=[] NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=['M'] NT=Phospho;AC=Unimod:21;MT=Variable;PP=Anywhere;TA=S,Y,T 4.5 ppm 1 lesSDRF v0.1.0
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229 Not available Not available 3 not applicable Trametinib Not applicable Not applicable enrichment of phosphorylated protein 3 brain Mus musculus F proteomic profiling by mass spectrometry Run 3 NT=Trypsin/P QX32035GM 1 20 ppm Q Exactive HF-X label free sample NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=['C'] NT=Acetyl;AC=Unimod:1;MT=Variable;PP=Protein N-term;TA=[] NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=['M'] NT=Phospho;AC=Unimod:21;MT=Variable;PP=Anywhere;TA=S,Y,T 4.5 ppm 1 lesSDRF v0.1.0
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221 Not available Not available 4 not applicable Vehicle Not applicable Not applicable enrichment of phosphorylated protein 4 brain Mus musculus M proteomic profiling by mass spectrometry Run 4 NT=Trypsin/P QX32038GM 1 20 ppm Q Exactive HF-X label free sample NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=['C'] NT=Acetyl;AC=Unimod:1;MT=Variable;PP=Protein N-term;TA=[] NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=['M'] NT=Phospho;AC=Unimod:21;MT=Variable;PP=Anywhere;TA=S,Y,T 4.5 ppm 1 lesSDRF v0.1.0
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459 Not available Not available 5 not applicable Trametinib Not applicable Not applicable enrichment of phosphorylated protein 5 brain Mus musculus F proteomic profiling by mass spectrometry Run 5 NT=Trypsin/P QX32041GM 1 20 ppm Q Exactive HF-X label free sample NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=['C'] NT=Acetyl;AC=Unimod:1;MT=Variable;PP=Protein N-term;TA=[] NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=['M'] NT=Phospho;AC=Unimod:21;MT=Variable;PP=Anywhere;TA=S,Y,T 4.5 ppm 1 lesSDRF v0.1.0
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322 Not available Not available 6 not applicable Trametinib Not applicable Not applicable enrichment of phosphorylated protein 6 brain Mus musculus F proteomic profiling by mass spectrometry Run 6 NT=Trypsin/P QX32044GM 1 20 ppm Q Exactive HF-X label free sample NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=['C'] NT=Acetyl;AC=Unimod:1;MT=Variable;PP=Protein N-term;TA=[] NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=['M'] NT=Phospho;AC=Unimod:21;MT=Variable;PP=Anywhere;TA=S,Y,T 4.5 ppm 1 lesSDRF v0.1.0
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223 Not available Not available 7 not applicable Vehicle Not applicable Not applicable enrichment of phosphorylated protein 7 brain Mus musculus M proteomic profiling by mass spectrometry Run 7 NT=Trypsin/P QX32047GM 1 20 ppm Q Exactive HF-X label free sample NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=['C'] NT=Acetyl;AC=Unimod:1;MT=Variable;PP=Protein N-term;TA=[] NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=['M'] NT=Phospho;AC=Unimod:21;MT=Variable;PP=Anywhere;TA=S,Y,T 4.5 ppm 1 lesSDRF v0.1.0
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460 Not available Not available 8 not applicable Trametinib Not applicable Not applicable enrichment of phosphorylated protein 8 brain Mus musculus F proteomic profiling by mass spectrometry Run 8 NT=Trypsin/P QX32050GM 1 20 ppm Q Exactive HF-X label free sample NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=['C'] NT=Acetyl;AC=Unimod:1;MT=Variable;PP=Protein N-term;TA=[] NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=['M'] NT=Phospho;AC=Unimod:21;MT=Variable;PP=Anywhere;TA=S,Y,T 4.5 ppm 1 lesSDRF v0.1.0
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234 Not available Not available 9 not applicable Vehicle Not applicable Not applicable enrichment of phosphorylated protein 9 brain Mus musculus M proteomic profiling by mass spectrometry Run 9 NT=Trypsin/P QX32053GM 1 20 ppm Q Exactive HF-X label free sample NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=['C'] NT=Acetyl;AC=Unimod:1;MT=Variable;PP=Protein N-term;TA=[] NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=['M'] NT=Phospho;AC=Unimod:21;MT=Variable;PP=Anywhere;TA=S,Y,T 4.5 ppm 1 lesSDRF v0.1.0
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323 Not available Not available 10 not applicable Trametinib Not applicable Not applicable enrichment of phosphorylated protein 10 brain Mus musculus M proteomic profiling by mass spectrometry Run 10 NT=Trypsin/P QX32056GM 1 20 ppm Q Exactive HF-X label free sample NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=['C'] NT=Acetyl;AC=Unimod:1;MT=Variable;PP=Protein N-term;TA=[] NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=['M'] NT=Phospho;AC=Unimod:21;MT=Variable;PP=Anywhere;TA=S,Y,T 4.5 ppm 1 lesSDRF v0.1.0
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227 Not available Not available 11 not applicable Trametinib Not applicable Not applicable enrichment of phosphorylated protein 11 brain Mus musculus M proteomic profiling by mass spectrometry Run 11 NT=Trypsin/P QX32059GM 1 20 ppm Q Exactive HF-X label free sample NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=['C'] NT=Acetyl;AC=Unimod:1;MT=Variable;PP=Protein N-term;TA=[] NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=['M'] NT=Phospho;AC=Unimod:21;MT=Variable;PP=Anywhere;TA=S,Y,T 4.5 ppm 1 lesSDRF v0.1.0
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228 Not available Not available 12 not applicable Trametinib Not applicable Not applicable enrichment of phosphorylated protein 12 brain Mus musculus M proteomic profiling by mass spectrometry Run 12 NT=Trypsin/P QX32062GM 1 20 ppm Q Exactive HF-X label free sample NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=['C'] NT=Acetyl;AC=Unimod:1;MT=Variable;PP=Protein N-term;TA=[] NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=['M'] NT=Phospho;AC=Unimod:21;MT=Variable;PP=Anywhere;TA=S,Y,T 4.5 ppm 1 lesSDRF v0.1.0
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321 Not available Not available 13 not applicable Vehicle Not applicable Not applicable enrichment of phosphorylated protein 13 brain Mus musculus M proteomic profiling by mass spectrometry Run 13 NT=Trypsin/P QX32065GM 1 20 ppm Q Exactive HF-X label free sample NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=['C'] NT=Acetyl;AC=Unimod:1;MT=Variable;PP=Protein N-term;TA=[] NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=['M'] NT=Phospho;AC=Unimod:21;MT=Variable;PP=Anywhere;TA=S,Y,T 4.5 ppm 1 lesSDRF v0.1.0
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319 Not available Not available 14 not applicable Trametinib Not applicable Not applicable enrichment of phosphorylated protein 14 brain Mus musculus M proteomic profiling by mass spectrometry Run 14 NT=Trypsin/P QX32068GM 1 20 ppm Q Exactive HF-X label free sample NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=['C'] NT=Acetyl;AC=Unimod:1;MT=Variable;PP=Protein N-term;TA=[] NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=['M'] NT=Phospho;AC=Unimod:21;MT=Variable;PP=Anywhere;TA=S,Y,T 4.5 ppm 1 lesSDRF v0.1.0
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217 Not available Not available 15 not applicable Vehicle Not applicable Not applicable enrichment of phosphorylated protein 15 brain Mus musculus F proteomic profiling by mass spectrometry Run 15 NT=Trypsin/P QX32071GM 1 20 ppm Q Exactive HF-X label free sample NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=['C'] NT=Acetyl;AC=Unimod:1;MT=Variable;PP=Protein N-term;TA=[] NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=['M'] NT=Phospho;AC=Unimod:21;MT=Variable;PP=Anywhere;TA=S,Y,T 4.5 ppm 1 lesSDRF v0.1.0
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224 Not available Not available 16 not applicable Vehicle Not applicable Not applicable enrichment of phosphorylated protein 16 brain Mus musculus F proteomic profiling by mass spectrometry Run 16 NT=Trypsin/P QX32074GM 1 20 ppm Q Exactive HF-X label free sample NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=['C'] NT=Acetyl;AC=Unimod:1;MT=Variable;PP=Protein N-term;TA=[] NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=['M'] NT=Phospho;AC=Unimod:21;MT=Variable;PP=Anywhere;TA=S,Y,T 4.5 ppm 1 lesSDRF v0.1.0

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