Adding SWATH and diaPASEF

Author: ypriverol

sdrf-proteomics/README.adoc

@@ -526,10 +526,12 @@ Curators can decide to annotate multiple ProteomeXchange datasets into one large
 
 Proteomics data acquisition method can happen in two ways: Data Dependent Acquisition (DDA) or Data Independent Acquisition (DIA). The SDRF-Proteomics file format allows to capture the method used for the data acquisition in the _comment[proteomics data acquisition method]_ column. The following values are RECOMMENDED for DDA and DIA:
 
-- data-dependent acquisition
-- data-independent acquisition
-- parallel reaction monitoring
-- selected reaction monitoring
+* https://www.ebi.ac.uk/ols4/ontologies/pride/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FPRIDE_0000627[data-dependent acquisition]
+* https://www.ebi.ac.uk/ols4/ontologies/pride/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FPRIDE_0000450[data-independent acquisition]
+  - https://www.ebi.ac.uk/ols4/ontologies/pride/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FPRIDE_0000650?lang=en[diaPASEF]
+  - https://www.ebi.ac.uk/ols4/ontologies/pride/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FPRIDE_0000447[SWATH MS]
+* https://www.ebi.ac.uk/ols4/ontologies/pride/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FPRIDE_0000629[parallel reaction monitoring]
+* https://www.ebi.ac.uk/ols4/ontologies/pride/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FPRIDE_0000630[selected reaction monitoring]
 
 TIP: If the SDRF do not specified the proteomics data acquisition method as _comment[proteomics data acquisition method]_, it is assumed that the method used is DDA which is the most common method used in proteomics.