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update license
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.github/workflows/quantms-containers.yml

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@@ -129,6 +129,9 @@ jobs:
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contents: read
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packages: write
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env:
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OPENMS_VERSION: "2025.04.14" # Manually defined version for OpenMS
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steps:
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- name: Checkout repository
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uses: actions/checkout@v4
@@ -143,10 +146,6 @@ jobs:
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username: ${{ github.actor }}
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password: ${{ secrets.GHCR_TOKEN }}
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- name: Set date tag
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id: date
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run: echo "DATE_TAG=$(date +'%Y.%m.%d')" >> $GITHUB_OUTPUT
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- name: Pull OpenMS Docker container
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id: pull_docker
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uses: nick-fields/retry@v2
@@ -159,9 +158,9 @@ jobs:
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- name: Tag and push OpenMS Docker container
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if: steps.pull_docker.outcome == 'success'
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run: |
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# Set container names
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# Set container names using the fixed version
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SOURCE_CONTAINER="ghcr.io/openms/openms-tools-thirdparty:latest"
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TARGET_CONTAINER="ghcr.io/bigbio/openms-tools-thirdparty:${{ steps.date.outputs.DATE_TAG }}"
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TARGET_CONTAINER="ghcr.io/bigbio/openms-tools-thirdparty:${{ env.OPENMS_VERSION }}"
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echo "Tagging as $TARGET_CONTAINER"
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docker tag $SOURCE_CONTAINER $TARGET_CONTAINER
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# Login to GitHub Container Registry
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echo ${{ secrets.GHCR_TOKEN }} | singularity remote login -u ${{ secrets.GHCR_USERNAME }} --password-stdin oras://ghcr.io
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# Set SIF paths and push with date tag
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echo "Pushing OpenMS SIF with date tag"
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singularity push openms-tools-thirdparty.sif oras://ghcr.io/bigbio/openms-tools-thirdparty-sif:${{ steps.date.outputs.DATE_TAG }} || {
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echo "Failed to push with date tag, retrying..."
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# Set SIF paths and push with version tag
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echo "Pushing OpenMS SIF with version tag"
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singularity push openms-tools-thirdparty.sif oras://ghcr.io/bigbio/openms-tools-thirdparty-sif:${{ env.OPENMS_VERSION }} || {
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echo "Failed to push with version tag, retrying..."
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sleep 60
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singularity push openms-tools-thirdparty.sif oras://ghcr.io/bigbio/openms-tools-thirdparty-sif:${{ steps.date.outputs.DATE_TAG }}
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singularity push openms-tools-thirdparty.sif oras://ghcr.io/bigbio/openms-tools-thirdparty-sif:${{ env.OPENMS_VERSION }}
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}
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# If this is a release push or a GitHub release event, also tag as latest

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