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lines changed Original file line number Diff line number Diff line change @@ -61,6 +61,32 @@ R and Python.
6161
6262# Getting Started
6363
64+ ## Installing ADAM via Conda
65+
66+ ADAM is available in Conda via Bioconda, https://bioconda.github.io
67+
68+ ``` bash
69+ $ conda install adam
70+ ```
71+
72+ ## Installing ADAM via Homebrew
73+
74+ ADAM is available in Homebrew via Brewsci/bio, https://github.com/brewsci/homebrew-bio
75+
76+ ``` bash
77+ $ brew install brewsci/bio/adam
78+ ```
79+
80+ ## Installing ADAM via Docker
81+
82+ ADAM is available in Docker via BioContainers, https://biocontainers.pro
83+
84+ ``` bash
85+ $ docker pull quay.io/biocontainers/adam:{tag}
86+ ```
87+
88+ Find ` {tag} ` on the tag search page, https://quay.io/repository/biocontainers/adam?tab=tags
89+
6490## Building from Source
6591
6692You will need to have [ Apache Maven] ( http://maven.apache.org/ ) version 3.3.9 or
@@ -77,6 +103,9 @@ $ mvn install
77103You'll need to have a Spark release on your system and the ` $SPARK_HOME ` environment variable pointing at it;
78104prebuilt binaries can be downloaded from the [ Spark website] ( http://spark.apache.org/downloads.html ) .
79105
106+ As of ADAM version 0.37.0, Spark version 3.2.0 or later is required.
107+
108+
80109# Documentation
81110
82111ADAM's documentation is available at http://adam.readthedocs.io .
Original file line number Diff line number Diff line change @@ -35,6 +35,8 @@ will need to have the Spark binaries on your system; prebuilt binaries
3535can be downloaded from the `Spark
3636website <http://spark.apache.org/downloads.html> `__.
3737
38+ As of ADAM version 0.37.0, Spark version 3.2.0 or later is required.
39+
3840Once this alias is in place, you can run ADAM by simply typing
3941``adam-submit `` at the command line.
4042
@@ -131,11 +133,11 @@ Installation of ``devtools`` may require ``libgit2`` as a dependency.
131133 apt-get install libgit2-dev
132134
133135 The build also requires you to have the ``SparkR `` package installed,
134- where ``v2 .x.x `` should match your Spark version.
136+ where ``v3 .x.x `` should match your Spark version.
135137
136138.. code :: bash
137139
138- R -e " devtools::install_github('apache/spark@v2 .x.x', subdir='R/pkg')"
140+ R -e " devtools::install_github('apache/spark@v3 .x.x', subdir='R/pkg')"
139141
140142 The ADAM JARs can then be provided to ``SparkR `` with the following bash
141143commands:
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