add directed mappings

Author: jsstevenson

src/anyvar/restapi/objects_router.py

@@ -5,7 +5,7 @@
 from http import HTTPStatus
 from typing import Annotated, cast
 
-from fastapi import APIRouter, Body, HTTPException, Request, Response
+from fastapi import APIRouter, Body, HTTPException, Query, Request, Response
 from fastapi.params import Path
 from fastapi.responses import JSONResponse, StreamingResponse
 from ga4gh.vrs.dataproxy import DataProxyValidationError
@@ -482,7 +482,7 @@ def get_object_mapping(
     ],
     as_source: Annotated[
         bool,
-        Path(
+        Query(
             ...,
             description="If `true`, get mappings where `vrs_id` corresponds to the mapping source; otherwise, get mappings where `vrs_id` is the mapping destination",
         ),

tests/integration/restapi/objects_router/test_mappings.py

@@ -161,13 +161,28 @@ def test_get_mapping_valid_request_found(restapi_client, stored_variation_mappin
         ]
     }
 
+    resp = restapi_client.get(
+        f"/object/{dest_vrs_obj['id']}/mappings/{DEFAULT_MAPPING_TYPE}",
+        params={"as_source": False},
+    )
+    assert resp.status_code == HTTPStatus.OK
+    assert resp.json() == {
+        "mappings": [
+            {
+                "source_id": source_vrs_id,
+                "dest_id": dest_vrs_obj["id"],
+                "mapping_type": DEFAULT_MAPPING_TYPE,
+            }
+        ]
+    }
+
 
 def test_get_mapping_valid_request_not_found(restapi_client, stored_variation_mappings):
     """Test valid request where result is not found for GET method"""
     source_vrs_obj, _ = stored_variation_mappings[0]
     source_vrs_id = source_vrs_obj["id"]
 
-    resp = restapi_client.get(f"/object/{source_vrs_id}/mappings/transcription")
+    resp = restapi_client.get(f"/object/{source_vrs_id}/mappings/transcribe_to")
     assert resp.status_code == HTTPStatus.OK
     assert resp.json() == {"mappings": []}
 
@@ -190,5 +205,5 @@ def test_get_mapping_invalid_mapping(restapi_client, stored_variation_mappings):
     assert resp.status_code == HTTPStatus.UNPROCESSABLE_ENTITY
     assert (
         resp.json()["detail"][0]["msg"]
-        == "Input should be 'liftover', 'transcription' or 'translation'"
+        == "Input should be 'liftover_to', 'transcribe_to' or 'translate_to'"
     )