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jsstevensonjsstevenson
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ruff fixes
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‎.github/actions/action.yml‎

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name: "Setup Python Environment"
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description: "Set up Python environment for the given Python version"
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inputs:
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python-version:
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description: "Python version to use"
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required: true
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default: "3.13"
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uv-version:
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description: "uv version to use"
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required: true
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default: "0.7.14"
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runs:
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using: "composite"
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steps:
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- uses: actions/setup-python@v5
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with:
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python-version: ${{ inputs.python-version }}
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- name: Install uv
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uses: astral-sh/setup-uv@v6
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with:
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version: ${{ inputs.uv-version }}
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enable-cache: 'true'
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cache-suffix: ${{ matrix.python-version }}
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- name: Install Python dependencies
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run: uv sync --frozen
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shell: bash

‎.github/workflows/labels.yml‎

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https://raw.githubusercontent.com/biocommons/.github/main/etc/labels.yml
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.github/labels.yml
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delete-other-labels: false
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delete-other-labels: false

‎.github/workflows/python-ci-cd.yml‎

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name: Python CI/CD
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permissions:
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contents: write
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id-token: write
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on:
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push:
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branches: ["*"]
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tags: ["*"]
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jobs:
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python-ci-cd:
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name: Python CI/CD
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permissions:
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contents: write
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id-token: write
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uses: biocommons/.github/.github/workflows/python-ci-cd.yml@main
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with:
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publish: ${{ github.event_name == 'push' && startsWith(github.ref, 'refs/tags/') }}
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secrets:
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pypi-token: ${{ secrets.UV_PUBLISH_TOKEN }}

‎.github/workflows/python-package.yaml‎

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‎.gitignore‎

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*~
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archive
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*.bak
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# Usually these files are written by a python script from a template
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# before PyInstaller builds the exe, so as to inject date/other infos into it.
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build
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build/
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# Byte-compiled / optimized / DLL files
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.cache
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celerybeat-schedule
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# celery beat schedule file
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# C extensions
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cover
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*,cover
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.coverage
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.coverage.*
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coverage.xml
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develop-eggs/
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dist
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dist/
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# Distribution / packaging
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# Django stuff:
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doc/_build
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docs/_build/
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# Flask stuff:
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# IPython Notebook
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# Installer logs
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# PyBuilder
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# PyInstaller
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# Rope project settings
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# Scrapy stuff:
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# Sphinx documentation
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# Spyder project settings
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# Translations
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# Unit test / coverage reports
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# celery beat schedule file
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# dotenv
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downloads/
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.DS_Store
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# pyenv
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# virtualenv
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*$py.class
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*,cover
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*.bak
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*.egg
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*.egg-info
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*.egg-info/
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.eggs
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.eggs/
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eggs/
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*.enc
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.env
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env/
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ENV/
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# Flask stuff:
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htmlcov/
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.hypothesis/
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.installed.cfg
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# Installer logs
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instance/
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*.ipynb
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.ipynb_checkpoints
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# IPython Notebook
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*.json
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.keys
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lib/
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lib64/
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local_settings.py
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*.log
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*.manifest
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*.mo
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nosetests.xml
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*.orig
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parts/
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pip-delete-this-directory.txt
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pip-log.txt
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*.pot
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# PyBuilder
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*.pyc
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__pycache__/
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*$py.class
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*.py[cod]
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# pyenv
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# PyInstaller
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*.pyc
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*.pyo
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.pytest_cache
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*.rej
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*.so
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*.spec
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*~
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.DS_Store
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.Python
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.cache
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.coverage
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.coverage.*
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.eggs
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.eggs/
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.env
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.hypothesis/
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.installed.cfg
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.ipynb_checkpoints
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.keys
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.pytest_cache
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.python-version
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*.rej
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.ropeproject
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# Rope project settings
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.scrapy
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# Scrapy stuff:
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sdist/
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*.so
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*.spec
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# Sphinx documentation
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.spyderproject
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# Spyder project settings
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.tags
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.tags.mk
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.tox/
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.webassets-cache
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ENV/
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__pycache__/
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archive
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build
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build/
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celerybeat-schedule
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cover
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coverage.xml
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develop-eggs/
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dist
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dist/
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doc/_build
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docs/_build/
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downloads/
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eggs/
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env/
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htmlcov/
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instance/
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lib/
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lib64/
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local_settings.py
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nosetests.xml
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parts/
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pip-delete-this-directory.txt
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pip-log.txt
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sdist/
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target/
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tmp
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.tox/
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# Translations
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# Unit test / coverage reports
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# Usually these files are written by a python script from a template
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var/
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ve3k/
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venv/
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# virtualenv
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.webassets-cache

‎TODO‎

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** provide uncached access
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** support history
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** default args is misplaced -- it should go in client instead
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‎docs/conf.py‎

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# -*- coding: utf-8 -*-
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#
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# eutils documentation build configuration file, created by
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# sphinx-quickstart on Tue Aug 11 10:03:31 2015.
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# All configuration values have a default; values that are commented out
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# serve to show the default.
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import sys
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import os
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import sphinx_rtd_theme
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‎docs/contributing.rst‎

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$ hg push
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* If you'd like to contribute back, create a pull request.
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‎docs/design‎

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QueryService -- provides eutils web requests
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CachingQueryService -- subclass of above, with selectable caching
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Client -- uses QS to
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Client -- uses QS to
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EasyClient -- combine esearch + efetch
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‎misc/eutils-xml-examples/efetch.fcgi?db=nuccore&id=319655736&retmode=xml‎

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</GBSeq>
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</GBSet>
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