Docker building

Changes to be committed:
	modified:   Dockerfile
	modified:   admin_only/bco_api.conf
	modified:   bco_api/bco_api/settings.py
	modified:   bco_api/server.conf
	new file:   docker-compose.yml

Author: HadleyKing

Dockerfile

@@ -1,4 +1,4 @@
-FROM ubuntu:21.04
+FROM ubuntu:22.04
 LABEL org.opencontainers.image.source https://github.com/biocompute-objects/bco_api
 ENV DEBIAN_FRONTEND=noninteractive
 
@@ -7,29 +7,27 @@ ENV DJANGO_SUPERUSER_PASSWORD="BioCompute123"
 ENV DJANGO_SUPERUSER_USERNAME="BioComputeSuperUser"
 ENV DJANGO_SUPERUSER_EMAIL="[email protected]"
 
-RUN apt-get -qq update && apt-get install -y python3 python3-dev python3-pip
+RUN apt-get -qq update && apt-get install -y python3.9 python3-dev python3-pip
 
-RUN python3.9 -m pip install --upgrade pip
+RUN python3 -m pip install --upgrade pip
 
 WORKDIR /biocompute_api
 
 COPY requirements.txt .
-COPY apitests.py .
-COPY apitests_new.py .
 
-RUN python3.9 -m pip install -r requirements.txt
+RUN python3 -m pip install -r requirements.txt
 
-COPY admin_only ./admin_only
+# COPY admin_only ./admin_only
 COPY bco_api ./bco_api
 #COPY static ./static
-COPY docs ./docs
+# COPY docs ./docs
 
 WORKDIR /biocompute_api/bco_api
 
-RUN python3.9 manage.py migrate
-RUN python3.9 manage.py loaddata ./api/fixtures/metafixtures.json
-RUN python3.9 manage.py createsuperuser --no-input
+RUN python3 manage.py migrate
+RUN python3 manage.py createsuperuser --no-input
 
+EXPOSE 8000
 #CMD ["bash"]
-ENTRYPOINT ["python3.9", "manage.py", "runserver"]
+ENTRYPOINT ["python3", "manage.py", "runserver"]
 CMD ["0.0.0.0:8000"]

admin_only/bco_api.conf

@@ -1,5 +1,5 @@
 
-erver {
+server {
     listen 80;
     server_name 161.253.252.154 test.portal.biochemistry.gwu.edu;
     return 301 https://$host$request_uri;

bco_api/bco_api/settings.py

@@ -96,8 +96,6 @@
         CORS_ORIGIN_ALLOW_ALL = True
 
 # Use the REST framework
-# Source: https://www.django-rest-framework.org/api-guide/authentication/#setting-the-authentication-scheme
-# Source: https://www.django-rest-framework.org/api-guide/permissions/#setting-the-permission-policy
 REST_FRAMEWORK = {
     "DEFAULT_AUTHENTICATION_CLASSES": [
         "rest_framework.authentication.TokenAuthentication"
@@ -200,7 +198,7 @@
 DATABASES = {
     "default": {
         "ENGINE": "django.db.backends.sqlite3",
-        "NAME": os.path.join(BASE_DIR, "db.sqlite3"),
+        "NAME": server_config["DATABASES"]["path"],
     }
 }
 
@@ -268,8 +266,6 @@
             OBJECT_NAMING[i] = server_config["OBJECT_NAMING"][i]
 
 # emailing notifications
-
-# e-Mail settings are explained at https://stackoverflow.com/questions/46053085/django-gmail-smtp-error-please-run-connect-first
 EMAIL_BACKEND = "django.core.mail.backends.smtp.EmailBackend"
 EMAIL_HOST = "localhost"
 EMAIL_PORT = 25

bco_api/server.conf

@@ -20,6 +20,11 @@ publishonly=False
 [KEYS]
 anon=627626823549f787c3ec763ff687169206626149
 
+[DATABASES]
+# default settting
+path=./db.sqlite3
+# path=/Users/hadleyking/GitHub/biocompute-objects/dev/data/db.sqlite3
+
 # Which host names do you want to associate with the server?
 # Note: the local hostname (i.e. 127.0.0.1) should come at the end.
 [HOSTNAMES]

docker-compose.yml

@@ -0,0 +1,25 @@
+#cat docker-compose.yml
+
+version: '3.4'
+
+services:
+  bco-api:
+    build: .
+    # image: ghcr.io/biocompute-objects/bco_api:latest
+    container_name: bco-api
+    environment:
+      TZ: 'America/New_York'
+
+    ports:
+      - "8000:8000"
+    read_only: true
+    tmpfs:
+      - /tmp
+    restart: unless-stopped
+    stdin_open: true
+    tty: true
+
+    # volumes:
+      #  - /Users/hadleyking/GitHub/biocompute-objects/dev/data/db.sqlite3:/biocompute_api/bco_api/db.sqlite3
+      #  - /Users/hadleyking/GitHub/biocompute-objects/dev/data/server.conf:/biocompute_api/bco_api/server.conf
+