Fix Django CI issue (#340)

biocompute-objects/portal_userdb#380

Changes to be committed:
	modified:   .github/workflows/django.yml
	modified:   biocompute/apis.py
	modified:   biocompute/models.py
	modified:   config/settings.py
	modified:   config/urls.py

Author: HadleyKing

.github/workflows/django.yml

@@ -24,9 +24,7 @@ jobs:
       run: |
         python -m pip install --upgrade pip
         pip install -r requirements.txt
-    - name: Create .secret file
-      run: |
-        echo "${{ secrets.PORTAL_USERDB_SECRET }}" > server/.secret
+
     - name: Run Tests
       run: |
         python3.9 manage.py test

biocompute/apis.py

@@ -244,7 +244,6 @@ def post(self, request) -> Response:
                 data=bco_results
             )
 
-        import pdb; pdb.set_trace()
         return Response(status=status.HTTP_200_OK, data=response_data)
 
         # for index, object in enumerate(data):
@@ -307,7 +306,6 @@ def post(self, request) -> Response:
         #         continue
 
         #     bco_results = validator.parse_and_validate(bco_instance.contents)
-        #     import pdb; pdb.set_trace()
         #     identifier, results = bco_results.popitem()
 
         #     if results["number_of_errors"] > 0:
@@ -499,7 +497,7 @@ def post(self, request) -> Response:
                 message=message,
                 data=results
             ))
-
+        
         status_code = response_status(accepted_requests, rejected_requests)
         return Response(status=status_code, data=response_data)
 

biocompute/models.py

@@ -19,7 +19,7 @@
 ]
 
 class Bco(models.Model):
-    """BioComput Object Model.
+    """BioCompute Object Model.
 
     Attributes:
     -----------

config/settings.py

@@ -9,29 +9,35 @@
 BASE_DIR = os.path.dirname(os.path.dirname(os.path.abspath(__file__)))
 
 # --- SECURITY SETTINGS --- #
-# Load the server config file.
-secrets = configparser.ConfigParser()
-secrets.read(BASE_DIR + "/.secrets")
-DEBUG = secrets["SERVER"]["DEBUG"]
-VERSION = secrets["SERVER"]["SERVER_VERSION"]
-# Set the anonymous user's key.
-ANON_KEY = secrets["DJANGO_KEYS"]["ANON_KEY"]
-ALLOWED_HOSTS = secrets["SERVER"]["ALLOWED_HOSTS"].split(',')
-# SECURITY WARNING: keep the secret key used in production secret!
-SECRET_KEY = secrets["DJANGO_KEYS"]["SECRET_KEY"]
-
-# SECURITY WARNING: don't run with debug turned on in production!
-
-# The publicly accessible hostname.
-HOSTNAME = secrets["SERVER"]["HOSTNAME"]
-# The human-readable hostname.
-HUMAN_READABLE_HOSTNAME = secrets["SERVER"]["HUMAN_READABLE_HOSTNAME"]
-# The publicly accessible hostname.
-PUBLIC_HOSTNAME = secrets["SERVER"]["PUBLIC_HOSTNAME"]
-
-
-CORS_ORIGIN_ALLOW_ALL = True
-CORS_ORIGIN_WHITELIST = ["*"]
+# Load the server .secrets file.
+try:
+    secrets = configparser.ConfigParser()
+    secrets.read(BASE_DIR + "/.secrets")
+    DEBUG = secrets["SERVER"]["DEBUG"]
+    VERSION = secrets["SERVER"]["SERVER_VERSION"]
+    ANON_KEY = secrets["DJANGO_KEYS"]["ANON_KEY"]
+    ALLOWED_HOSTS = secrets["SERVER"]["ALLOWED_HOSTS"].split(',')
+    SECRET_KEY = secrets["DJANGO_KEYS"]["SECRET_KEY"]
+    HOSTNAME = secrets["SERVER"]["HOSTNAME"]
+    DATABASE=secrets["SERVER"]["DATABASE"]
+    HUMAN_READABLE_HOSTNAME = secrets["SERVER"]["HUMAN_READABLE_HOSTNAME"]
+    PUBLIC_HOSTNAME = secrets["SERVER"]["PUBLIC_HOSTNAME"]
+    EMAIL_BACKEND = secrets["SERVER"]["EMAIL_BACKEND"]
+
+except KeyError:
+    SECRET_KEY="^2uql114+yy0d$xv6+lm8*#1=uxs_oa0zw0bvu^fpi4tc9x0i"
+    ANON_KEY="627626823549f787c3ec763ff687169206626149"
+    DEBUG=True
+    ALLOWED_HOSTS="*"
+    SERVER_VERSION="24.08.08"
+    HOSTNAME="127.0.0.1:8000"
+    HUMAN_READABLE_HOSTNAME="Local Test BCODB"
+    PUBLIC_HOSTNAME="http://127.0.0.1:8000"
+    SERVER_URL="http://localhost:3000"
+    DATABASE="db.sqlite3"
+    EMAIL_BACKEND="django.core.mail.backends.console.EmailBackend"
+    CORS_ORIGIN_ALLOW_ALL = True
+    CORS_ORIGIN_WHITELIST = ["*"]
 
 # Use the REST framework
 REST_FRAMEWORK = {
@@ -144,7 +150,7 @@
 DATABASES = {
     "default": {
         "ENGINE": "django.db.backends.sqlite3",
-        "NAME": secrets["SERVER"]["DATABASE"],
+        "NAME": DATABASE,
     }
 }
 
@@ -178,7 +184,7 @@
 # Make the object naming accessible as a dictionary.
 
 # emailing notifications
-EMAIL_BACKEND = secrets["SERVER"]["EMAIL_BACKEND"]
+EMAIL_BACKEND = EMAIL_BACKEND
 EMAIL_HOST = "localhost"
 EMAIL_PORT = 25
 DEFAULT_AUTO_FIELD = "django.db.models.AutoField"

config/urls.py

@@ -11,7 +11,7 @@
 from rest_framework import permissions
 from biocompute.apis import DraftRetrieveApi, PublishedRetrieveApi
 
-VERSION = settings.VERSION
+VERSION = settings.SERVER_VERSION
 
 ShcemaView = get_schema_view(
     openapi.Info(