Skip to content

Cross-species comparison #4

@nuno-agostinho

Description

@nuno-agostinho

Features:

  • Weighted Pearson correlation based on expression conservation (EC) between cell types (heatmaps for multi-species comparisons)
    • Requires ICC-derived expression conservation (EC) values
  • SAMap scores to determine pairs of similar cell types
    • heatmaps for multi-species comparisons
    • Sankey plots for 1-to-1 comparison
  • AUCell
  • Genes driving cell type similarity (for free in SAMap, for free in AUCell, shared genes FC > 2 in the two cell types if correlation)

Metadata

Metadata

Labels

enhancementImprovements to existing features

Projects

No projects

Milestone

No milestone

Relationships

None yet

Development

No branches or pull requests

Issue actions