Troubleshoot

standage · standage · commit fbf2aa50870e · 2025-04-30T14:34:19.000-04:00
diff --git a/microhapulator/workflows/analysis.smk b/microhapulator/workflows/analysis.smk
@@ -269,7 +269,9 @@ rule plot_haplotype_calls:
     run:
         result = TypingResult(fromfile=input.result)
         mhapi.plot_haplotype_calls(
-            result, f"analysis/{wildcards.sample}/03typing/callplots", sample=wildcards.sample
+            result,
+            "analysis/{}/03typing/callplots".format(wildcards.sample),
+            sample=wildcards.sample,
         )
 
 

Original file line number	Diff line number	Diff line change
`@@ -269,7 +269,9 @@ rule plot_haplotype_calls:`
`269`	`269`	`run:`
`270`	`270`	`result = TypingResult(fromfile=input.result)`
`271`	`271`	`mhapi.plot_haplotype_calls(`
`272`		`- result, f"analysis/{wildcards.sample}/03typing/callplots", sample=wildcards.sample`
	`272`	`+ result,`
	`273`	`+ "analysis/{}/03typing/callplots".format(wildcards.sample),`
	`274`	`+ sample=wildcards.sample,`
`273`	`275`	`)`
`274`	`276`
`275`	`277`