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Update models for use-case 2
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collection/10.5281/zenodo.5749843/resource.yaml

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status: accepted
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version_id: '5888237'
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version_name: revision 1
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links: [imjoy/BioImageIO-Packager, ilastik/ilastik, deepimagej/deepimagej]
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links: [imjoy/BioImageIO-Packager, ilastik/ilastik, deepimagej/deepimagej, zero/notebook_u-net_3d_zerocostdl4mic]
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tags: [zerocostdl4mic, deepimagej, segmentation, 3d, unet, fluorescence-light-microscopy, cell-membrane, plant, arabidopsis, tensorflow]
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training_data:
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id: ilastik/plantseg_ovules
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description: 'A 3D U-net to predict cell membranes in plant tissues, trained on volumes of Arabidopsis thaliana ovules acquired on a confocal microscope.'
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- created: '2022-01-19 10:16:02.455027'
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doi: 10.5281/zenodo.5877226
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name: '3D UNet - arabidopsis - ZeroCostDL4Mic'
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rdf_source: 'https://zenodo.org/api/files/3759664b-38bf-4ba8-b61d-b017dcf420d1/rdf.yaml'
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status: accepted
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version_id: '5877226'
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version_id: '5877226'
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version_name: revision 2
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links: [imjoy/BioImageIO-Packager, ilastik/ilastik, deepimagej/deepimagej]
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- created: '2021-12-02 14:27:16.753974+00:00'

collection/10.5281/zenodo.6348728/resource.yaml

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name: Arabidopsis Leaf Segmentation
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version_name: version 1
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rdf_source: https://zenodo.org/api/files/647f8e3d-3f05-4e3d-a43e-e72717a076a0/rdf.yaml
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links: [deepimagej/deepimagej, imjoy/BioImageIO-Packager, ilastik/ilastik, zero/notebook_u-net_3d_zerocostdl4mic]
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training_data:
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id: ilastik/arabidopsis_tissue_atlas
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id: 10.5281/zenodo.6348728
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doi: 10.5281/zenodo.6348728
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type: model

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