Deploying to gh-pages from @ bfd4543 🚀

Author: FynnBe

README.md

@@ -364,6 +364,10 @@ may be controlled with the `LOGURU_LEVEL` environment variable.
 
 ## Changelog
 
+### 0.9.2
+
+fix model inference tolerance reporting
+
 ### 0.9.1
 
 - fixes:

bioimageio/core.html

@@ -460,7 +460,7 @@ <h2>API Documentation</h2>
     </ul>
 
 
-            <footer>bioimageio.core 0.9.1</footer>
+            <footer>bioimageio.core 0.9.2</footer>
 
         <a class="attribution" title="pdoc: Python API documentation generator" href="https://pdoc.dev" target="_blank">
             built with <span class="visually-hidden">pdoc</span><img
@@ -486,7 +486,7 @@ <h1 class="modulename">
 </span><span id="L-3"><a href="#L-3"><span class="linenos">  3</span></a><span class="sd">&quot;&quot;&quot;</span>
 </span><span id="L-4"><a href="#L-4"><span class="linenos">  4</span></a><span class="c1"># ruff: noqa: E402</span>
 </span><span id="L-5"><a href="#L-5"><span class="linenos">  5</span></a>
-</span><span id="L-6"><a href="#L-6"><span class="linenos">  6</span></a><span class="n">__version__</span> <span class="o">=</span> <span class="s2">&quot;0.9.1&quot;</span>
+</span><span id="L-6"><a href="#L-6"><span class="linenos">  6</span></a><span class="n">__version__</span> <span class="o">=</span> <span class="s2">&quot;0.9.2&quot;</span>
 </span><span id="L-7"><a href="#L-7"><span class="linenos">  7</span></a><span class="kn">from</span><span class="w"> </span><span class="nn">loguru</span><span class="w"> </span><span class="kn">import</span> <span class="n">logger</span>
 </span><span id="L-8"><a href="#L-8"><span class="linenos">  8</span></a>
 </span><span id="L-9"><a href="#L-9"><span class="linenos">  9</span></a><span class="n">logger</span><span class="o">.</span><span class="n">disable</span><span class="p">(</span><span class="s2">&quot;bioimageio.core&quot;</span><span class="p">)</span>
@@ -607,7 +607,7 @@ <h1 class="modulename">
                 <section id="__version__">
                     <div class="attr variable">
             <span class="name">__version__</span>        =
-<span class="default_value">&#39;0.9.1&#39;</span>
+<span class="default_value">&#39;0.9.2&#39;</span>
 
 
     </div>
@@ -1651,7 +1651,7 @@ <h6 id="returns">Returns:</h6>
 <div class="attr function">
 
         <span class="def">def</span>
-        <span class="name">compute_dataset_measures</span><span class="signature pdoc-code multiline">(<span class="param">	<span class="n">measures</span><span class="p">:</span> <span class="n">Iterable</span><span class="p">[</span><span class="n">Annotated</span><span class="p">[</span><span class="n">Union</span><span class="p">[</span><span class="n"><a href="core/stat_measures.html#DatasetMean">bioimageio.core.stat_measures.DatasetMean</a></span><span class="p">,</span> <span class="n"><a href="core/stat_measures.html#DatasetStd">bioimageio.core.stat_measures.DatasetStd</a></span><span class="p">,</span> <span class="n"><a href="core/stat_measures.html#DatasetVar">bioimageio.core.stat_measures.DatasetVar</a></span><span class="p">,</span> <span class="n"><a href="core/stat_measures.html#DatasetPercentile">bioimageio.core.stat_measures.DatasetPercentile</a></span><span class="p">],</span> <span class="n">Discriminator</span><span class="p">(</span><span class="n">discriminator</span><span class="o">=</span><span class="s1">&#39;name&#39;</span><span class="p">,</span> <span class="n">custom_error_type</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">custom_error_message</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">custom_error_context</span><span class="o">=</span><span class="kc">None</span><span class="p">)]]</span>,</span><span class="param">	<span class="n">dataset</span><span class="p">:</span> <span class="n">Iterable</span><span class="p">[</span><span class="n"><a href="#Sample">Sample</a></span><span class="p">]</span></span><span class="return-annotation">) -> <span class="n">Dict</span><span class="p">[</span><span class="n">Annotated</span><span class="p">[</span><span class="n">Union</span><span class="p">[</span><span class="n"><a href="core/stat_measures.html#DatasetMean">bioimageio.core.stat_measures.DatasetMean</a></span><span class="p">,</span> <span class="n"><a href="core/stat_measures.html#DatasetStd">bioimageio.core.stat_measures.DatasetStd</a></span><span class="p">,</span> <span class="n"><a href="core/stat_measures.html#DatasetVar">bioimageio.core.stat_measures.DatasetVar</a></span><span class="p">,</span> <span class="n"><a href="core/stat_measures.html#DatasetPercentile">bioimageio.core.stat_measures.DatasetPercentile</a></span><span class="p">],</span> <span class="n">Discriminator</span><span class="p">(</span><span class="n">discriminator</span><span class="o">=</span><span class="s1">&#39;name&#39;</span><span class="p">,</span> <span class="n">custom_error_type</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">custom_error_message</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">custom_error_context</span><span class="o">=</span><span class="kc">None</span><span class="p">)],</span> <span class="n">Union</span><span class="p">[</span><span class="nb">float</span><span class="p">,</span> <span class="n">Annotated</span><span class="p">[</span><span class="n"><a href="#Tensor">Tensor</a></span><span class="p">,</span> <span class="n">BeforeValidator</span><span class="p">(</span><span class="n">func</span><span class="o">=&lt;</span><span class="n">function</span> <span class="n">tensor_custom_before_validator</span> <span class="n">at</span> <span class="mh">0x7fb1c4f11440</span><span class="o">&gt;</span><span class="p">,</span> <span class="n">json_schema_input_type</span><span class="o">=</span><span class="n">PydanticUndefined</span><span class="p">),</span> <span class="n">PlainSerializer</span><span class="p">(</span><span class="n">func</span><span class="o">=&lt;</span><span class="n">function</span> <span class="n">tensor_custom_serializer</span> <span class="n">at</span> <span class="mh">0x7fb1c4f11620</span><span class="o">&gt;</span><span class="p">,</span> <span class="n">return_type</span><span class="o">=</span><span class="n">PydanticUndefined</span><span class="p">,</span> <span class="n">when_used</span><span class="o">=</span><span class="s1">&#39;always&#39;</span><span class="p">)]]]</span>:</span></span>
+        <span class="name">compute_dataset_measures</span><span class="signature pdoc-code multiline">(<span class="param">	<span class="n">measures</span><span class="p">:</span> <span class="n">Iterable</span><span class="p">[</span><span class="n">Annotated</span><span class="p">[</span><span class="n">Union</span><span class="p">[</span><span class="n"><a href="core/stat_measures.html#DatasetMean">bioimageio.core.stat_measures.DatasetMean</a></span><span class="p">,</span> <span class="n"><a href="core/stat_measures.html#DatasetStd">bioimageio.core.stat_measures.DatasetStd</a></span><span class="p">,</span> <span class="n"><a href="core/stat_measures.html#DatasetVar">bioimageio.core.stat_measures.DatasetVar</a></span><span class="p">,</span> <span class="n"><a href="core/stat_measures.html#DatasetPercentile">bioimageio.core.stat_measures.DatasetPercentile</a></span><span class="p">],</span> <span class="n">Discriminator</span><span class="p">(</span><span class="n">discriminator</span><span class="o">=</span><span class="s1">&#39;name&#39;</span><span class="p">,</span> <span class="n">custom_error_type</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">custom_error_message</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">custom_error_context</span><span class="o">=</span><span class="kc">None</span><span class="p">)]]</span>,</span><span class="param">	<span class="n">dataset</span><span class="p">:</span> <span class="n">Iterable</span><span class="p">[</span><span class="n"><a href="#Sample">Sample</a></span><span class="p">]</span></span><span class="return-annotation">) -> <span class="n">Dict</span><span class="p">[</span><span class="n">Annotated</span><span class="p">[</span><span class="n">Union</span><span class="p">[</span><span class="n"><a href="core/stat_measures.html#DatasetMean">bioimageio.core.stat_measures.DatasetMean</a></span><span class="p">,</span> <span class="n"><a href="core/stat_measures.html#DatasetStd">bioimageio.core.stat_measures.DatasetStd</a></span><span class="p">,</span> <span class="n"><a href="core/stat_measures.html#DatasetVar">bioimageio.core.stat_measures.DatasetVar</a></span><span class="p">,</span> <span class="n"><a href="core/stat_measures.html#DatasetPercentile">bioimageio.core.stat_measures.DatasetPercentile</a></span><span class="p">],</span> <span class="n">Discriminator</span><span class="p">(</span><span class="n">discriminator</span><span class="o">=</span><span class="s1">&#39;name&#39;</span><span class="p">,</span> <span class="n">custom_error_type</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">custom_error_message</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">custom_error_context</span><span class="o">=</span><span class="kc">None</span><span class="p">)],</span> <span class="n">Union</span><span class="p">[</span><span class="nb">float</span><span class="p">,</span> <span class="n">Annotated</span><span class="p">[</span><span class="n"><a href="#Tensor">Tensor</a></span><span class="p">,</span> <span class="n">BeforeValidator</span><span class="p">(</span><span class="n">func</span><span class="o">=&lt;</span><span class="n">function</span> <span class="n">tensor_custom_before_validator</span> <span class="n">at</span> <span class="mh">0x7f8c5de29440</span><span class="o">&gt;</span><span class="p">,</span> <span class="n">json_schema_input_type</span><span class="o">=</span><span class="n">PydanticUndefined</span><span class="p">),</span> <span class="n">PlainSerializer</span><span class="p">(</span><span class="n">func</span><span class="o">=&lt;</span><span class="n">function</span> <span class="n">tensor_custom_serializer</span> <span class="n">at</span> <span class="mh">0x7f8c5de29620</span><span class="o">&gt;</span><span class="p">,</span> <span class="n">return_type</span><span class="o">=</span><span class="n">PydanticUndefined</span><span class="p">,</span> <span class="n">when_used</span><span class="o">=</span><span class="s1">&#39;always&#39;</span><span class="p">)]]]</span>:</span></span>
 
                 <label class="view-source-button" for="compute_dataset_measures-view-source"><span>View Source</span></label>
 
@@ -3727,7 +3727,7 @@ <h6 id="arguments">Arguments:</h6>
                             </div>
                             <div id="Sample.stat" class="classattr">
                                 <div class="attr variable">
-            <span class="name">stat</span><span class="annotation">: Dict[Annotated[Union[Annotated[Union[<a href="core/stat_measures.html#SampleMean">bioimageio.core.stat_measures.SampleMean</a>, <a href="core/stat_measures.html#SampleStd">bioimageio.core.stat_measures.SampleStd</a>, <a href="core/stat_measures.html#SampleVar">bioimageio.core.stat_measures.SampleVar</a>, <a href="core/stat_measures.html#SampleQuantile">bioimageio.core.stat_measures.SampleQuantile</a>], Discriminator(discriminator=&#39;name&#39;, custom_error_type=None, custom_error_message=None, custom_error_context=None)], Annotated[Union[<a href="core/stat_measures.html#DatasetMean">bioimageio.core.stat_measures.DatasetMean</a>, <a href="core/stat_measures.html#DatasetStd">bioimageio.core.stat_measures.DatasetStd</a>, <a href="core/stat_measures.html#DatasetVar">bioimageio.core.stat_measures.DatasetVar</a>, <a href="core/stat_measures.html#DatasetPercentile">bioimageio.core.stat_measures.DatasetPercentile</a>], Discriminator(discriminator=&#39;name&#39;, custom_error_type=None, custom_error_message=None, custom_error_context=None)]], Discriminator(discriminator=&#39;scope&#39;, custom_error_type=None, custom_error_message=None, custom_error_context=None)], Union[float, Annotated[<a href="#Tensor">Tensor</a>, BeforeValidator(func=&lt;function tensor_custom_before_validator at 0x7fb1c4f11440&gt;, json_schema_input_type=PydanticUndefined), PlainSerializer(func=&lt;function tensor_custom_serializer at 0x7fb1c4f11620&gt;, return_type=PydanticUndefined, when_used=&#39;always&#39;)]]]</span>
+            <span class="name">stat</span><span class="annotation">: Dict[Annotated[Union[Annotated[Union[<a href="core/stat_measures.html#SampleMean">bioimageio.core.stat_measures.SampleMean</a>, <a href="core/stat_measures.html#SampleStd">bioimageio.core.stat_measures.SampleStd</a>, <a href="core/stat_measures.html#SampleVar">bioimageio.core.stat_measures.SampleVar</a>, <a href="core/stat_measures.html#SampleQuantile">bioimageio.core.stat_measures.SampleQuantile</a>], Discriminator(discriminator=&#39;name&#39;, custom_error_type=None, custom_error_message=None, custom_error_context=None)], Annotated[Union[<a href="core/stat_measures.html#DatasetMean">bioimageio.core.stat_measures.DatasetMean</a>, <a href="core/stat_measures.html#DatasetStd">bioimageio.core.stat_measures.DatasetStd</a>, <a href="core/stat_measures.html#DatasetVar">bioimageio.core.stat_measures.DatasetVar</a>, <a href="core/stat_measures.html#DatasetPercentile">bioimageio.core.stat_measures.DatasetPercentile</a>], Discriminator(discriminator=&#39;name&#39;, custom_error_type=None, custom_error_message=None, custom_error_context=None)]], Discriminator(discriminator=&#39;scope&#39;, custom_error_type=None, custom_error_message=None, custom_error_context=None)], Union[float, Annotated[<a href="#Tensor">Tensor</a>, BeforeValidator(func=&lt;function tensor_custom_before_validator at 0x7f8c5de29440&gt;, json_schema_input_type=PydanticUndefined), PlainSerializer(func=&lt;function tensor_custom_serializer at 0x7f8c5de29620&gt;, return_type=PydanticUndefined, when_used=&#39;always&#39;)]]]</span>
 
 
     </div>

bioimageio/core/axis.html

@@ -89,7 +89,7 @@ <h2>API Documentation</h2>
     </ul>
 
 
-            <footer>bioimageio.core 0.9.1</footer>
+            <footer>bioimageio.core 0.9.2</footer>
 
         <a class="attribution" title="pdoc: Python API documentation generator" href="https://pdoc.dev" target="_blank">
             built with <span class="visually-hidden">pdoc</span><img

bioimageio/core/block_meta.html

@@ -113,7 +113,7 @@ <h2>API Documentation</h2>
     </ul>
 
 
-            <footer>bioimageio.core 0.9.1</footer>
+            <footer>bioimageio.core 0.9.2</footer>
 
         <a class="attribution" title="pdoc: Python API documentation generator" href="https://pdoc.dev" target="_blank">
             built with <span class="visually-hidden">pdoc</span><img

bioimageio/core/cli.html

@@ -317,7 +317,7 @@ <h2>API Documentation</h2>
     </ul>
 
 
-            <footer>bioimageio.core 0.9.1</footer>
+            <footer>bioimageio.core 0.9.2</footer>
 
         <a class="attribution" title="pdoc: Python API documentation generator" href="https://pdoc.dev" target="_blank">
             built with <span class="visually-hidden">pdoc</span><img
@@ -3745,7 +3745,7 @@ <h5>Inherited Members</h5>
             <div class="docstring"><p>bioimageio - CLI for bioimage.io resources 🦒</p>
 
 <p>library versions:
-  <a href="../core.html">bioimageio.core</a> 0.9.1
+  <a href="../core.html">bioimageio.core</a> 0.9.2
   <a href="../spec.html">bioimageio.spec</a> 0.5.5.4</p>
 
 <p>spec format versions:

bioimageio/core/commands.html

@@ -50,7 +50,7 @@ <h2>API Documentation</h2>
     </ul>
 
 
-            <footer>bioimageio.core 0.9.1</footer>
+            <footer>bioimageio.core 0.9.2</footer>
 
         <a class="attribution" title="pdoc: Python API documentation generator" href="https://pdoc.dev" target="_blank">
             built with <span class="visually-hidden">pdoc</span><img

bioimageio/core/common.html

@@ -131,7 +131,7 @@ <h2>API Documentation</h2>
     </ul>
 
 
-            <footer>bioimageio.core 0.9.1</footer>
+            <footer>bioimageio.core 0.9.2</footer>
 
         <a class="attribution" title="pdoc: Python API documentation generator" href="https://pdoc.dev" target="_blank">
             built with <span class="visually-hidden">pdoc</span><img

bioimageio/core/digest_spec.html

@@ -98,7 +98,7 @@ <h2>API Documentation</h2>
     </ul>
 
 
-            <footer>bioimageio.core 0.9.1</footer>
+            <footer>bioimageio.core 0.9.2</footer>
 
         <a class="attribution" title="pdoc: Python API documentation generator" href="https://pdoc.dev" target="_blank">
             built with <span class="visually-hidden">pdoc</span><img

bioimageio/core/io.html

@@ -68,7 +68,7 @@ <h2>API Documentation</h2>
     </ul>
 
 
-            <footer>bioimageio.core 0.9.1</footer>
+            <footer>bioimageio.core 0.9.2</footer>
 
         <a class="attribution" title="pdoc: Python API documentation generator" href="https://pdoc.dev" target="_blank">
             built with <span class="visually-hidden">pdoc</span><img

bioimageio/core/model_adapters.html

@@ -59,7 +59,7 @@ <h2>API Documentation</h2>
     </ul>
 
 
-            <footer>bioimageio.core 0.9.1</footer>
+            <footer>bioimageio.core 0.9.2</footer>
 
         <a class="attribution" title="pdoc: Python API documentation generator" href="https://pdoc.dev" target="_blank">
             built with <span class="visually-hidden">pdoc</span><img