skip installation of careamics

Author: FynnBe

bioimageio/core/cli.py

@@ -515,7 +515,7 @@ def _example(self):
             stats=stats_file,
             blockwise=self.blockwise,
         )
-        assert is_yaml_value(cli_example_args)
+        assert is_yaml_value(cli_example_args), cli_example_args
         write_yaml(
             cli_example_args,
             bioimageio_cli_path,

dev/env-full.yaml

@@ -6,7 +6,6 @@ channels:
 dependencies:
   - bioimageio.spec==0.5.4.3
   - black
-  - careamics
   - cellpose # for model testing
   # - crick  # currently requires python<=3.9
   - h5py
@@ -19,7 +18,6 @@ dependencies:
   - matplotlib
   - monai # for model testing
   - napari
-
   - numpy
   - onnx
   - onnxruntime
@@ -48,5 +46,6 @@ dependencies:
   - typing-extensions
   - xarray>=2024.01,<2025.3.0
   - pip:
+      # - careamics # for model testing (TODO: install without exact bioimageio.core pin)
       - git+https://github.com/ChaoningZhang/MobileSAM.git # for model testing
       - -e ..

dev/env-gpu.yaml

@@ -43,7 +43,7 @@ dependencies:
   - pip:
       # - tf2onnx # TODO: add tf2onnx
       - --extra-index-url https://download.pytorch.org/whl/cu126
-      - careamics # TODO: add careamics for model testing (currently pins pydantic to <2.9)
+      # - careamics # for model testing (TODO: install without exact bioimageio.core pin)
       - git+https://github.com/ChaoningZhang/MobileSAM.git # for model testing
       - onnxruntime-gpu
       - tensorflow