Merge branch 'bump_spec' into dev + black

# Conflicts:
#	dev/env-dev.yaml
#	dev/env-full.yaml
#	dev/env-gpu.yaml
#	dev/env-py38.yaml
#	setup.py

Author: FynnBe

README.md

@@ -364,6 +364,10 @@ may be controlled with the `LOGURU_LEVEL` environment variable.
 
 ## Changelog
 
+### 0.9.0 (coming soon)
+
+- update to [bioimageio.spec 0.5.4.2](https://github.com/bioimage-io/spec-bioimage-io/blob/main/changelog.md#bioimageiospec-0542)
+
 ### 0.8.0
 
 - breaking: removed `decimals` argument from bioimageio CLI and `bioimageio.core.commands.test()`

example/model_usage.ipynb

@@ -32,6 +32,7 @@
     "# type: ignore\n",
     "dry_run: bool = True\n",
     "\n",
+    "\n",
     "def install_missing(name: str, version: str):\n",
     "    if dry_run:\n",
     "        print(f\"Missing dependency {name}; would install {name}=={version}\")\n",
@@ -108,12 +109,13 @@
     "            # TODO: add plt.imshow\n",
     "\n",
     "else:\n",
+    "\n",
     "    def show_images(images: Mapping[str, Tensor]):\n",
     "        v = napari.Viewer()\n",
     "        for name, tensor in images.items():\n",
     "            im = tensor.data.data\n",
     "            print(f\"napari viewer: adding {name}\")\n",
-    "            _ = v.add_image(im, name=name)\n"
+    "            _ = v.add_image(im, name=name)"
    ]
   },
   {
@@ -206,7 +208,9 @@
     "    raise TypeError(\"Invalid model description\")\n",
     "elif not isinstance(model, ModelDescr):\n",
     "    model.validation_summary.display()\n",
-    "    raise TypeError(f\"This notebook requires the latest model format version {ModelDescr.implemented_format_version}.\")\n"
+    "    raise TypeError(\n",
+    "        f\"This notebook requires the latest model format version {ModelDescr.implemented_format_version}.\"\n",
+    "    )"
    ]
   },
   {
@@ -1670,7 +1674,7 @@
    "source": [
     "from bioimageio.core import Sample\n",
     "\n",
-    "sample = Sample(members={\"raw\": test_input_tensor}, stat=None, id=\"sample-from-numpy\")\n",
+    "sample = Sample(members={\"raw\": test_input_tensor}, stat={}, id=\"sample-from-numpy\")\n",
     "\n",
     "sample"
    ]