Merge pull request #110 from bioimage-io/fix-ci

Fix release script in CI

Author: oeway

.github/workflows/release.yml

@@ -26,16 +26,17 @@ jobs:
           python -m pip install --upgrade pip
           pip --version
 
-      - name: Install dependencies
+      - name: install tox
         run: |
-          pip install wheel
-          pip install tox tox-gh-actions
+          pip install tox
 
-      - name: Test with tox
-        run: tox
+      - name: run tests
+        run: |
+          tox
 
-      - name: Check passthrough models
-        run: python scripts/generate_passthrough_modules.py check
+      - name: Install build dependencies
+        run: |
+          pip install wheel
 
       - name: Check if there is a parent commit
         id: check-parent-commit

setup.py

@@ -25,10 +25,10 @@
         "Programming Language :: Python :: 3.8",
     ],
     packages=find_namespace_packages(exclude=["tests"]),  # Required
-    install_requires=["bioimageio.spec", "imageio>=2.5", "numpy", "xarray"],
+    install_requires=["bioimageio.spec", "imageio>=2.5", "numpy", "ruamel.yaml", "xarray"],
     include_package_data=True,
     extras_require={
-        "test": ["pytest", "tox"],
+        "test": ["pytest"],
         "dev": ["pre-commit"],
         "pytorch": ["pytorch>=1.6", "torchvision", "cudatoolkit>=10.1"],
         "tensorflow": ["tensorflow"],

tox.ini

@@ -0,0 +1,8 @@
+[tox]
+envlist = py37
+
+[testenv]
+deps =
+    pytest
+commands =
+    pytest