add cellpose for model testing

Author: FynnBe

dev/env-py38.yaml

@@ -1,4 +1,4 @@
-# manipulated copy of env.yaml
+# manipulated copy of env.yaml wo dependencies 'for model testing'
 name: core38
 channels:
   - conda-forge

dev/env-tf.yaml

@@ -1,4 +1,4 @@
-# modified copy of env.yaml
+# modified copy of env.yaml wo dependencies 'for model testing'
 name: core-tf # changed
 channels:
   - conda-forge

dev/env-wo-python.yaml

@@ -1,4 +1,4 @@
-# modified copy of env.yaml
+# modified copy of env.yaml wo dependencies 'for model testing'
 name: core
 channels:
   - conda-forge

dev/env.yaml

@@ -7,6 +7,7 @@ dependencies:
   - bioimageio.spec>=0.5.3.6
   - black
   # - careamics # TODO: add careamics for model testing (currently pins pydantic to <2.9)
+  - cellpose # for model testing
   # - crick  # currently requires python<=3.9
   - h5py
   - imagecodecs
@@ -29,7 +30,7 @@ dependencies:
   - pyright
   - pytest
   - pytest-cov
-  - python=3.12
+  - python=3.11 # 3.12 not supported by cellpose->fastremap
   - pytorch>=2.1,<3
   - requests
   - rich

setup.py

@@ -67,6 +67,7 @@
                 "pytest",
                 "segment-anything",  # for model testing
                 "timm",  # for model testing
+                "cellpose",  # for model testing
             ]
         ),
     },