test with py3.13 and for TF with spec-main

Author: FynnBe

.github/workflows/build.yaml

@@ -26,7 +26,7 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: ['3.8', '3.9', '3.10', '3.11', '3.12']
+        python-version: ['3.8', '3.9', '3.10', '3.11', '3.12', '3.13']
     steps:
     - uses: actions/checkout@v4
     - name: Install Conda environment with Micromamba
@@ -68,7 +68,10 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: ['3.8', '3.12']
+        python-version: ['3.8', '3.13']
+        include:
+          - python-version: '3.13'
+            is-dev-version: true
     steps:
     - uses: actions/checkout@v4
     - name: Install Conda environment with Micromamba
@@ -109,33 +112,69 @@ jobs:
       run: pytest --disable-pytest-warnings
       env:
         BIOIMAGEIO_CACHE_PATH: bioimageio_cache
-    - if: matrix.python-version == '3.12' && github.event_name == 'pull_request'
+    - if: matrix.is-dev-version && github.event_name == 'pull_request'
       uses: orgoro/[email protected]
       with:
         coverageFile: coverage.xml
         token: ${{ secrets.GITHUB_TOKEN }}
-    - if: matrix.python-version == '3.12' && github.ref == 'refs/heads/main'
+    - if: matrix.is-dev-version && github.ref == 'refs/heads/main'
       run: |
         pip install genbadge[coverage]
         genbadge coverage --input-file coverage.xml --output-file ./dist/coverage/coverage-badge.svg
         coverage html -d dist/coverage
-    - if: matrix.python-version == '3.12' && github.ref == 'refs/heads/main'
+    - if: matrix.is-dev-version && github.ref == 'refs/heads/main'
       uses: actions/upload-artifact@v4
       with:
         name: coverage
         retention-days: 1
         path: dist
 
 
-  test-tf:
+  test-spec-main-tf:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: ['3.9', '3.11']
+        python-version: ['3.8', '3.13']
     steps:
     - uses: actions/checkout@v4
-    - name: Install Conda environment with Micromamba
-      uses: mamba-org/setup-micromamba@v1
+    - uses: mamba-org/setup-micromamba@v1
+      with:
+        cache-downloads: true
+        cache-environment: true
+        environment-file: dev/env-tf.yaml
+        condarc: |
+          channel-priority: flexible
+        create-args: >-
+          python=${{ matrix.python-version }}
+        post-cleanup: 'all'
+    - name: additional setup spec
+      run: |
+        conda remove --yes --force bioimageio.spec || true  # allow failure for cached env
+        pip install --no-deps git+https://github.com/bioimage-io/spec-bioimage-io
+    - name: additional setup core
+      run: pip install --no-deps -e .
+    - name: Get Date
+      id: get-date
+      run: |
+        echo "date=$(date +'%Y-%b')"
+        echo "date=$(date +'%Y-%b')" >> $GITHUB_OUTPUT
+      shell: bash
+    - uses: actions/cache@v4
+      with:
+        path: bioimageio_cache
+        key: "test-spec-main-tf-${{ steps.get-date.outputs.date }}"
+    - run: pytest --disable-pytest-warnings
+      env:
+        BIOIMAGEIO_CACHE_PATH: bioimageio_cache
+
+  test-spec-conda-tf:
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: ['3.9', '3.13']
+    steps:
+    - uses: actions/checkout@v4
+    - uses: mamba-org/setup-micromamba@v1
       with:
         cache-downloads: true
         cache-environment: true
@@ -156,7 +195,7 @@ jobs:
     - uses: actions/cache@v4
       with:
         path: bioimageio_cache
-        key: "test-tf-${{ steps.get-date.outputs.date }}"
+        key: "test-spec-conda-tf-${{ steps.get-date.outputs.date }}"
     - name: pytest-spec-tf
       run: pytest --disable-pytest-warnings
       env:
@@ -200,7 +239,7 @@ jobs:
           path: dist
       - uses: actions/setup-python@v5
         with:
-          python-version: '3.12'
+          python-version: '3.13'
           cache: 'pip'
       - run: pip install -e .[dev]
       - name: Generate developer docs