Merge pull request #719 from bioimage-io/dev

Update example notebook

Author: FynnBe

.github/workflows/build.yml

@@ -189,7 +189,7 @@ jobs:
 
   pip-build:
     name: Build and publish to PyPI
-    needs: test
+    needs: [test, conda-build]
     runs-on: ubuntu-latest
     steps:
       - name: Check out the repository

example/load_model_and_create_your_own.ipynb

@@ -322,9 +322,11 @@
     }
    ],
    "source": [
+    "from io import BinaryIO\n",
+    "\n",
     "for i, cover in enumerate(model.covers):\n",
     "    downloaded_cover = download(cover)\n",
-    "    cover_data: NDArray[Any] = imread(downloaded_cover.path)  # type: ignore\n",
+    "    cover_data: NDArray[Any] = imread(BinaryIO(downloaded_cover.read()))  # type: ignore\n",
     "    _ = plt.figure(figsize=(10, 10))\n",
     "    plt.imshow(cover_data)  # type: ignore\n",
     "    plt.xticks([])  # type: ignore\n",

scripts/docs_utils.py

@@ -14,9 +14,9 @@ def get_ref_url(
         >>> get_ref_url(
         ...     "class",
         ...     "Binarize",
-        ...     "https://github.com/bioimage-io/core-bioimage-io-python/blob/main/bioimageio/core/proc_ops.py"
+        ...     "https://github.com/bioimage-io/core-bioimage-io-python/blob/main/src/bioimageio/core/proc_ops.py"
         ... )
-        'https://github.com/bioimage-io/core-bioimage-io-python/blob/main/bioimageio/core/proc_ops.py#L...-L...'
+        'https://github.com/bioimage-io/core-bioimage-io-python/blob/main/src/bioimageio/core/proc_ops.py#L...-L...'
 
     """
     # hotfix to handle httpx not available in pyodide, see