fix broken imports

Author: FynnBe

bioimageio/spec/__main__.py

@@ -6,7 +6,7 @@
 import typer
 
 from bioimageio.spec import __version__, collection, commands, model, rdf
-from spec.shared.raw_nodes import URI
+from bioimageio.spec.shared.raw_nodes import URI
 
 enrich_partial_rdf_with_imjoy_plugin: Optional[Callable[[Dict[str, Any], Union[URI, Path]], Dict[str, Any]]]
 try:

bioimageio/spec/shared/common.py

@@ -133,7 +133,9 @@ class ValidationSummary(TypedDict):
     bioimageio_spec_version: str
     error: Union[None, str, Dict[str, Any]]
     name: str
-    nested_errors: Dict[str, dict]  # todo: mark as not required: typing_extensions.NotRequired (typing py 3.11)
+    nested_errors: Optional[
+        Dict[str, dict]
+    ]  # todo: mark as not required: typing_extensions.NotRequired (typing py 3.11)
     source_name: str
     status: Union[Literal["passed", "failed"], str]
     traceback: Optional[List[str]]

tests/test_dump_spec.py

@@ -3,8 +3,8 @@
 
 import pytest
 
+from bioimageio.spec.dataset.raw_nodes import Dataset
 from bioimageio.spec.shared import yaml
-from spec.dataset.raw_nodes import Dataset
 
 
 def test_spec_round_trip(unet2d_nuclei_broad_any_minor):