PGX_2024/index.Rmd at main · bioinformaticsdotca/PGX_2024 · GitHub

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---
title: "Pharmacogenomics Data Analysis 2024"
author: "Faculty: Benjamin Haibe-Kains, Jermiah Joseph, Nikta Feizi, Julia Nguyen, and Nia Hughes"
date: "October 17, 2024 - October 18, 2024"
site: bookdown::bookdown_site
documentclass: book
bibliography: [book.bib, packages.bib]
url: https://bioinformaticsdotca.github.io/PGX_2024/ # CHANGE THIS LINK TO YOUR LANDING PAGE LINK
cover-image: img/bioinformatics_logo.png
description: |
  Workshop website for the 2024 Pharmacogenomics Data Analysis Canadian Bioinformatics Workshop
link-citations: yes
github-repo: bioinformaticsdotca/PGX_2024 # CHANGE THIS TO YOUR OWN REPO
favicon: img/favicon.ico
---

# (PART) Introduction {-}

# Workshop Info

Welcome to the 2024 Pharmacogenomics Data Analysis Canadian Bioinformatics Workshop webpage!

## Class Photo

<iframe src="https://drive.google.com/file/d/1aUfyf57uF8PshyeRR1lKR7aF_VieF1ec/preview" width="640" height="480" allow="autoplay"></iframe>

## Schedule

| Time (EDT) |                                   October 17                                   | Time (EDT) |                                       October 18                                      |
|:----------:|:------------------------------------------------------------------------------:|:----------:|:-------------------------------------------------------------------------------------:|
|    8:30    |                               Arrivals & Check-in                              |    8:30    |                                        Arrivals                                       |
|    9:00    |                              Welcome (Nia Hughes)                              |    9:00    |   Module 3: Pharmacogenomics for biomarker discovery - Basic analysis (Nikta, Julia)  |
|    9:30    | Module 1: Introduction to pharmacogenomics in the context of cancer (Benjamin) |    10:00   |                                    Break (30 mins)                                    |
|    10:30   |                                 Break (30 mins)                                |    10:30   |             Module 3 Lab: Statistical analysis - Part 1 Lab (Nikta, Julia)            |
|    11:00   |     Module 1 Lab: Getting to know multi-omics data (Julia, Nikta, Jermiah)     |    12:30   |                               Class photo + Lunch (1 hr)                              |
|    13:00   |                                  Lunch (1 hr)                                  |    13:30   | Module 4: Pharmacogenomics for biomarker discovery - Advanced analysis (Nikta, Julia) |
|    14:00   |        Module 2: Data preparation for pharmacogenomic analysis (Jermiah)       |    14:30   |                                    Break (30 mins)                                    |
|    15:00   |                                 Break (30 mins)                                |    15:00   |               Module 4 Lab: Statistical analysis - Part 2 (Nikta, Julia)              |
|    15:30   |       Module 2 Lab: Hands-on with pharmacogenomics data (Jermiah, Almas)       |    17:00   |                                Survey & Closing Remarks                               |
|    17:30   |                                    Finished                                    |    17:30   |                                        Finished                                       |
## Pre-work

[You can find your pre-work here.](https://docs.google.com/forms/d/e/1FAIpQLSfVRGQTvRJG0PKQhkHZ_L7MQYYI_W5ZETPcBgMOVzMTwL2WMQ/viewform)