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README.md

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@@ -5,20 +5,20 @@ Algorithms that are built around BioJava and are running on Apache Spark
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[![Build Status](https://travis-ci.org/biojava/biojava-spark.svg?branch=master)](https://travis-ci.org/biojava/biojava-spark)
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[![License](http://img.shields.io/badge/license-LGPL_2.1-blue.svg?style=flat)](https://github.com/biojava/biojava/blob/master/LICENSE)
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[![Status](http://img.shields.io/badge/status-experimental-red.svg?style=flat)](https://github.com/biojava/biojava-spark)
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[![Version](http://img.shields.io/badge/version-0.2.0-blue.svg?style=flat)](https://github.com/biojava/biojava-spark/)
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[![Version](http://img.shields.io/badge/version-0.2.1-blue.svg?style=flat)](https://github.com/biojava/biojava-spark/)
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# Starting up
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### Some initial instructions can be found on the mmtf-spark project
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https://github.com/rcsb/mmtf-spark
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## First download and untar a Hadoop sequence file of the PDB (~7 GB download)
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```bash
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wget http://mmtf.rcsb.org/v0.2/hadoopfiles/full.tar
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wget http://mmtf.rcsb.org/v1.0/hadoopfiles/full.tar
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tar -xvf full.tar
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```
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Or you can get a C-alpha, phosphate, ligand only version (~800 Mb download)
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```bash
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wget http://mmtf.rcsb.org/v0.2/hadoopfiles/reduced.tar
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wget http://mmtf.rcsb.org/v1.0/hadoopfiles/reduced.tar
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tar -xvf reduced.tar
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```
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### Second add the biojava-spark dependecy to your pom
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<dependency>
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<groupId>org.biojava</groupId>
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<artifactId>biojava-spark</artifactId>
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<version>0.2.0</version>
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<version>0.2.1</version>
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</dependency>
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```
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