OWScatterPlot: Add column with groups to selected data output

Author: janezd

Orange/widgets/utils/annotated_data.py

@@ -103,19 +103,22 @@ def create_annotated_table(data, selected_indices):
     return table
 
 
-def create_groups_table(data, selection):
+def create_groups_table(data, selection,
+                        include_unselected=True,
+                        var_name=ANNOTATED_DATA_FEATURE_NAME):
     if data is None:
         return None
-    names = [var.name for var in data.domain.variables + data.domain.metas]
-    name = get_next_name(names, ANNOTATED_DATA_FEATURE_NAME)
-    metas = data.domain.metas + (
-        DiscreteVariable(
-            name,
-            ["Unselected"] + ["G{}".format(i + 1)
-                              for i in range(np.max(selection))]),
-    )
+    values = ["G{}".format(i + 1) for i in range(np.max(selection))]
+    if include_unselected:
+        values.insert(0, "Unselected")
+    else:
+        mask = np.flatnonzero(selection)
+        data = data[mask]
+        selection = selection[mask] - 1
+
+    var_name = get_next_name(data.domain, var_name)
+    metas = data.domain.metas + (DiscreteVariable(var_name, values), )
     domain = Domain(data.domain.attributes, data.domain.class_vars, metas)
     table = data.transform(domain)
-    table.metas[:, len(data.domain.metas):] = \
-        selection.reshape(len(data), 1)
+    table.metas[:, len(data.domain.metas):] = selection.reshape(len(data), 1)
     return table

Orange/widgets/visualize/owscatterplot.py

@@ -21,9 +21,9 @@
 from Orange.widgets.visualize.owscatterplotgraph import OWScatterPlotGraph
 from Orange.widgets.visualize.utils import VizRankDialogAttrPair
 from Orange.widgets.widget import OWWidget, AttributeList, Msg, Input, Output
-from Orange.widgets.utils.annotated_data import (create_annotated_table,
-                                                 ANNOTATED_DATA_SIGNAL_NAME,
-                                                 create_groups_table)
+from Orange.widgets.utils.annotated_data import (
+    create_annotated_table, create_groups_table, ANNOTATED_DATA_SIGNAL_NAME,
+    get_next_name)
 
 
 class ScatterPlotVizRank(VizRankDialogAttrPair):
@@ -428,25 +428,25 @@ def selection_changed(self):
         self.commit()
 
     def send_data(self):
-        selected = None
-        selection = None
-        # TODO: Implement selection for sql data
+        def _get_selected():
+            if not len(selection):
+                return None
+            return create_groups_table(data, graph.selection, False, "Group")
+
+        def _get_annotated():
+            if graph.selection is not None and np.max(graph.selection) > 1:
+                return create_groups_table(data, graph.selection)
+            else:
+                return create_annotated_table(data, selection)
+
         graph = self.graph
-        if isinstance(self.data, SqlTable):
-            selected = self.data
-        elif self.data is not None:
-            selection = graph.get_selection()
-            if len(selection) > 0:
-                selected = self.data[selection]
-        if graph.selection is not None and np.max(graph.selection) > 1:
-            annotated = create_groups_table(self.data, graph.selection)
-        else:
-            annotated = create_annotated_table(self.data, selection)
-        self.Outputs.selected_data.send(selected)
-        self.Outputs.annotated_data.send(annotated)
+        data = self.data
+        selection = graph.get_selection()
+        self.Outputs.annotated_data.send(_get_annotated())
+        self.Outputs.selected_data.send(_get_selected())
 
         # Store current selection in a setting that is stored in workflow
-        if selection is not None and len(selection):
+        if len(selection):
             self.selection_group = list(zip(selection, graph.selection[selection]))
         else:
             self.selection_group = None

Orange/widgets/visualize/tests/test_owscatterplot.py

@@ -18,13 +18,17 @@ class TestOWScatterPlot(WidgetTest, WidgetOutputsTestMixin):
     def setUpClass(cls):
         super().setUpClass()
         WidgetOutputsTestMixin.init(cls)
+        cls.same_input_output_domain = False
 
         cls.signal_name = "Data"
         cls.signal_data = cls.data
 
     def setUp(self):
         self.widget = self.create_widget(OWScatterPlot)
 
+    def _compare_selected_annotated_domains(self, selected, annotated):
+        pass
+
     def test_set_data(self):
         # Connect iris to scatter plot
         self.send_signal(self.widget.Inputs.data, self.data)
@@ -154,6 +158,9 @@ def test_group_selections(self):
         def selectedx():
             return self.get_output(self.widget.Outputs.selected_data).X
 
+        def selected_groups():
+            return self.get_output(self.widget.Outputs.selected_data).metas[:, 0]
+
         def annotated():
             return self.get_output(self.widget.Outputs.annotated_data).metas
 
@@ -163,6 +170,7 @@ def annotations():
         # Select 0:5
         graph.select(points[:5])
         np.testing.assert_equal(selectedx(), x[:5])
+        np.testing.assert_equal(selected_groups(), np.zeros(5))
         sel_column[:5] = 1
         np.testing.assert_equal(annotated(), sel_column)
         self.assertEqual(annotations(), ["No", "Yes"])
@@ -171,6 +179,7 @@ def annotations():
         with self.modifiers(Qt.ShiftModifier):
             graph.select(points[5:10])
         np.testing.assert_equal(selectedx(), x[:10])
+        np.testing.assert_equal(selected_groups(), np.array([0] * 5 + [1] * 5))
         sel_column[5:10] = 2
         np.testing.assert_equal(annotated(), sel_column)
         self.assertEqual(len(annotations()), 3)
@@ -180,12 +189,14 @@ def annotations():
         sel_column = np.zeros((len(self.data), 1))
         sel_column[15:20] = 1
         np.testing.assert_equal(selectedx(), x[15:20])
+        np.testing.assert_equal(selected_groups(), np.zeros(5))
         self.assertEqual(annotations(), ["No", "Yes"])
 
         # Alt-select (remove) 10:17; we have 17:20
         with self.modifiers(Qt.AltModifier):
             graph.select(points[10:17])
         np.testing.assert_equal(selectedx(), x[17:20])
+        np.testing.assert_equal(selected_groups(), np.zeros(3))
         sel_column[15:17] = 0
         np.testing.assert_equal(annotated(), sel_column)
         self.assertEqual(annotations(), ["No", "Yes"])
@@ -194,6 +205,7 @@ def annotations():
         with self.modifiers(Qt.ShiftModifier | Qt.ControlModifier):
             graph.select(points[20:25])
         np.testing.assert_equal(selectedx(), x[17:25])
+        np.testing.assert_equal(selected_groups(), np.zeros(8))
         sel_column[20:25] = 1
         np.testing.assert_equal(annotated(), sel_column)
         self.assertEqual(annotations(), ["No", "Yes"])
@@ -205,6 +217,7 @@ def annotations():
         with self.modifiers(Qt.ShiftModifier | Qt.ControlModifier):
             graph.select(points[35:40])
         sel_column[30:40] = 2
+        np.testing.assert_equal(selected_groups(), np.array([0] * 8 + [1] * 10))
         np.testing.assert_equal(annotated(), sel_column)
         self.assertEqual(len(annotations()), 3)