owheatmap: option to center palette

Author: markotoplak

Orange/widgets/visualize/owheatmap.py

@@ -213,9 +213,12 @@ def color_palette_table(colors,
     return np.c_[r, g, b]
 
 
-def levels_with_thresholds(low, high, threshold_low, threshold_high):
+def levels_with_thresholds(low, high, threshold_low, threshold_high, center_palette):
     lt = low + (high - low) * threshold_low
     ht = low + (high - low) * threshold_high
+    if center_palette:
+        ht = max(abs(lt), abs(ht))
+        lt = -max(abs(lt), abs(ht))
     return lt, ht
 
 
@@ -398,6 +401,8 @@ class Outputs:
         selected_data = Output("Selected Data", Table, default=True)
         annotated_data = Output(ANNOTATED_DATA_SIGNAL_NAME, Table)
 
+    settings_version = 2
+
     settingsHandler = settings.DomainContextHandler()
 
     NoPosition, PositionTop, PositionBottom = 0, 1, 2
@@ -408,6 +413,7 @@ class Outputs:
     gamma = settings.Setting(0)
     threshold_low = settings.Setting(0.0)
     threshold_high = settings.Setting(1.0)
+    center_palette = settings.Setting(False)
 
     merge_kmeans = settings.Setting(False)
     merge_kmeans_k = settings.Setting(50)
@@ -526,6 +532,9 @@ def __init__(self):
 
         colorbox.layout().addLayout(form)
 
+        gui.checkBox(colorbox, self, 'center_palette', 'Center colors at 0',
+                     callback=self.update_color_schema)
+
         mergebox = gui.vBox(self.controlArea, "Merge",)
         gui.checkBox(mergebox, self, "merge_kmeans", "Merge by k-means",
                      callback=self.update_sorting_examples)
@@ -1043,7 +1052,7 @@ def setup_scene(self, parts, data):
 
                 hw.set_levels(parts.levels)
                 hw.set_thresholds(self.threshold_low, self.threshold_high)
-                hw.set_color_table(palette)
+                hw.set_color_table(palette, self.center_palette)
                 hw.set_show_averages(self.averages)
                 hw.set_heatmap_data(X_part)
 
@@ -1118,7 +1127,7 @@ def setup_scene(self, parts, data):
             parts.levels[0], parts.levels[1], self.threshold_low, self.threshold_high,
             parent=widget)
 
-        legend.set_color_table(palette)
+        legend.set_color_table(palette, self.center_palette)
         legend.setMinimumSize(QSizeF(100, 20))
         legend.setVisible(self.legend)
 
@@ -1379,11 +1388,11 @@ def update_color_schema(self):
         palette = self.color_palette()
         for heatmap in self.heatmap_widgets():
             heatmap.set_thresholds(self.threshold_low, self.threshold_high)
-            heatmap.set_color_table(palette)
+            heatmap.set_color_table(palette, self.center_palette)
 
         for legend in self.legend_widgets():
             legend.set_thresholds(self.threshold_low, self.threshold_high)
-            legend.set_color_table(palette)
+            legend.set_color_table(palette, self.center_palette)
 
     def update_sorting_examples(self):
         self.update_heatmaps()
@@ -1660,6 +1669,7 @@ def __init__(self, parent=None, data=None, **kwargs):
 
         self.__levels = None
         self.__threshold_low, self.__threshold_high = 0., 1.
+        self.__center_palette = False
         self.__colortable = None
         self.__data = data
 
@@ -1736,8 +1746,9 @@ def set_show_averages(self, show):
             self.layout().invalidate()
             self.update()
 
-    def set_color_table(self, table):
+    def set_color_table(self, table, center):
         self.__colortable = table
+        self.__center_palette = center
         self._update_pixmap()
         self.update()
 
@@ -1758,7 +1769,8 @@ def _update_pixmap(self):
                 lut = None
 
             ll, lh = self.__levels
-            ll, lh = levels_with_thresholds(ll, lh, self.__threshold_low, self.__threshold_high)
+            ll, lh = levels_with_thresholds(ll, lh, self.__threshold_low, self.__threshold_high,
+                                            self.__center_palette)
 
             argb, _ = pg.makeARGB(
                 self.__data, lut=lut, levels=(ll, lh))
@@ -2117,6 +2129,7 @@ def __init__(self, low, high, threshold_low, threshold_high, parent=None):
         self.high = high
         self.threshold_low = threshold_low
         self.threshold_high = threshold_high
+        self.center_palette = False
         self.color_table = None
 
         layout = QGraphicsLinearLayout(Qt.Vertical)
@@ -2143,8 +2156,9 @@ def __init__(self, low, high, threshold_low, threshold_high, parent=None):
         layout.addItem(self.__pixitem)
         self.__update()
 
-    def set_color_table(self, color_table):
+    def set_color_table(self, color_table, center):
         self.color_table = color_table
+        self.center_palette = center
         self.__update()
 
     def set_thresholds(self, threshold_low, threshold_high):
@@ -2156,7 +2170,8 @@ def __update(self):
         data = np.linspace(self.low, self.high, num=1000)
         data = data.reshape((1, -1))
         ll, lh = levels_with_thresholds(self.low, self.high,
-                                        self.threshold_low, self.threshold_high)
+                                        self.threshold_low, self.threshold_high,
+                                        self.center_palette)
         argb, _ = pg.makeARGB(data, lut=self.color_table,
                               levels=(ll, lh))
         qimg = pg.makeQImage(argb, transpose=False)

Orange/widgets/visualize/tests/test_owheatmap.py

@@ -13,6 +13,14 @@
 from Orange.widgets.tests.base import WidgetTest, WidgetOutputsTestMixin, datasets
 
 
+def image_row_colors(image):
+    colors = np.full((image.height(), 3), np.nan)
+    for r in range(image.height()):
+        c = image.pixelColor(0, r)
+        colors[r] = c.red(), c.green(), c.blue()
+    return colors
+
+
 class TestOWHeatMap(WidgetTest, WidgetOutputsTestMixin):
     @classmethod
     def setUpClass(cls):
@@ -164,10 +172,7 @@ def test_use_enough_colors(self):
         self.widget.update_color_schema()
         heatmap_widget = self.widget.heatmap_widget_grid[0][0]
         image = heatmap_widget.heatmap_item.pixmap().toImage()
-        colors = np.full((len(data), 3), np.nan)
-        for r in range(len(data)):
-            c = image.pixelColor(0, r)
-            colors[r] = c.red(), c.green(), c.blue()
+        colors = image_row_colors(image)
         unique_colors = len(np.unique(colors, axis=0))
         self.assertLessEqual(len(data)*self.widget.threshold_low, unique_colors)
 
@@ -198,6 +203,29 @@ def test_saved_selection(self):
         self.send_signal(w.Inputs.data, iris, widget=w)
         self.assertEqual(len(self.get_output(w.Outputs.selected_data)), 21)
 
+    def test_center_palette(self):
+        data = np.arange(2).reshape(-1, 1)
+        table = Table.from_numpy(Domain([ContinuousVariable("y")]), data)
+        self.send_signal(self.widget.Inputs.data, table)
+
+        cb_model = self.widget.color_cb.model()
+        ind = cb_model.indexFromItem(cb_model.findItems("Green-Black-Red")[0]).row()
+        self.widget.palette_index = ind
+
+        desired_uncentered = [[0, 255, 0],
+                              [255, 0, 0]]
+
+        desired_centered = [[0, 0, 0],
+                            [255, 0, 0]]
+
+        for center, desired in [(False, desired_uncentered), (True, desired_centered)]:
+            self.widget.center_palette = center
+            self.widget.update_color_schema()
+            heatmap_widget = self.widget.heatmap_widget_grid[0][0]
+            image = heatmap_widget.heatmap_item.pixmap().toImage()
+            colors = image_row_colors(image)
+            np.testing.assert_almost_equal(colors, desired)
+
 
 if __name__ == "__main__":
     unittest.main()