finished up with part 1 of refactoring

Author: jerowe

'

@@ -0,0 +1,5 @@
+package BioX::Workflow::Command::run::Rules::Directives::Walk;
+
+use Moose::Role;
+
+1;

inotify-hookable.sh

@@ -3,7 +3,7 @@
 export DEV='DEV'
 inotify-hookable \
     --watch-directories lib \
-    --watch-directories t/lib/TestsFor/ \
-    --watch-directories t/lib/TestMethod/ \
+    --watch-directories t \
+    --watch-directories t \
     --watch-files t/test_class_tests.t \
     --on-modify-command "prove -v t/test_class_tests.t"

lib/BioX/Workflow/Command/Utils/Create.pm

@@ -1,4 +1,5 @@
 package BioX::Workflow::Command::Utils::Create;
+
 use MooseX::App::Role;
 use BioX::Workflow::Command::Utils::Traits qw(ArrayRefOfStrs);
 use Storable qw(dclone);

lib/BioX/Workflow/Command/Utils/Files/TrackChanges.pm

@@ -1,8 +1,8 @@
 package BioX::Workflow::Command::Utils::Files::TrackChanges;
 
 use Moose::Role;
-use DBM::Deep;
-use File::Spec;
+# use DBM::Deep;
+# use File::Spec;
 
 #TODO most of these should be in run
 

lib/BioX/Workflow/Command/run.pm

@@ -11,7 +11,7 @@ use BioX::Workflow::Command::run::Rules::Directives;
 
 with 'BioX::Workflow::Command::run::Utils::Samples';
 with 'BioX::Workflow::Command::run::Utils::Attributes';
-with 'BioX::Workflow::Command::run::Utils::Rules';
+with 'BioX::Workflow::Command::run::Rules::Rules';
 with 'BioX::Workflow::Command::run::Utils::WriteMeta';
 with 'BioX::Workflow::Command::run::Utils::Files::TrackChanges';
 with 'BioX::Workflow::Command::run::Utils::Files::ResolveDeps';