release 2.0.8

Author: jerowe

Changes

@@ -1,6 +1,10 @@
 Revision history for BioX-Workflow-Command
 
 {{$NEXT}}
+	- Cleaned up logging to create a table - no more wall of text!
+	- Fixed HPC meta to correctly overwrite global when global/local are arrayref of keys
+	- Follow symbolic links when looking for Samples
+	- Throw an error when making a directory fails
 
 2.0.7  2017-05-01 12:32:58 +04
 	- Added in chunking functionality

lib/BioX/Workflow/Command/run/Utils/Rules.pm

@@ -6,6 +6,7 @@ use Data::Merger qw(merger);
 use Data::Walk;
 use Data::Dumper;
 use File::Path qw(make_path remove_tree);
+use Try::Tiny;
 
 with 'BioX::Workflow::Command::Utils::Files::TrackChanges';
 use BioX::Workflow::Command::Utils::Traits qw(ArrayRefOfStrs);
@@ -655,8 +656,16 @@ sub walk_attr {
 
     $attr->walk_process_data( $self->rule_keys );
 
-    if ( $attr->create_outdir ) {
-        make_path( $attr->outdir );
+    if ( $attr->create_outdir && !$attr->outdir->is_dir ) {
+
+        try {
+            $attr->outdir->mkpath;
+        }
+        catch {
+            $self->app_log->fatal( "We were not able to make the directory.\n\t"
+                  . $attr->outdir
+                  . "\n\tError: $!" );
+        };
     }
 
     return $attr;